Transcriptome-Wide Mapping of Small-Molecule RNA-Binding Sites in Cells Informs an Isoform-Specific Degrader of QSOX1 mRNA

Y Tong, QMR Gibaut, W Rouse… - Journal of the …, 2022 - ACS Publications
The interactions between cellular RNAs in MDA-MB-231 triple negative breast cancer cells
and a panel of small molecules appended with a diazirine cross-linking moiety and an …

Chemoproteomic approaches to studying RNA modification-associated proteins

W Dai, NJ Yu, RE Kleiner - Accounts of chemical research, 2023 - ACS Publications
Conspectus The function of cellular RNA is modulated by a host of post-transcriptional
chemical modifications installed by dedicated RNA-modifying enzymes. RNA modifications …

Low-molecular weight small molecules can potently bind RNA and affect oncogenic pathways in cells

BM Suresh, Y Akahori, A Taghavi… - Journal of the …, 2022 - ACS Publications
RNA is challenging to target with bioactive small molecules, particularly those of low
molecular weight that bind with sufficient affinity and specificity. In this report, we developed …

RNA Chemical Proteomics Reveals the N6-Methyladenosine (m6A)-Regulated Protein–RNA Interactome

AE Arguello, AN DeLiberto… - Journal of the American …, 2017 - ACS Publications
Epitranscriptomic RNA modifications can regulate mRNA function; however, there is a major
gap in our understanding of the biochemical mechanisms mediating their effects. Here, we …

A designed small molecule inhibitor of a non-coding RNA sensitizes HER2 negative cancers to herceptin

MG Costales, DG Hoch, D Abegg… - Journal of the …, 2019 - ACS Publications
A small molecule (1) with overlapping affinity for two microRNA (miRNA) precursors was
used to inform design of a dimeric compound (2) selective for one of the miRNAs. In …

Activity-based RNA-modifying enzyme probing reveals DUS3L-mediated dihydrouridylation

W Dai, A Li, NJ Yu, T Nguyen, RW Leach… - Nature chemical …, 2021 - nature.com
Epitranscriptomic RNA modifications can regulate RNA activity; however, there remains a
major gap in our understanding of the RNA chemistry present in biological systems. Here we …

How we think about targeting RNA with small molecules

MG Costales, JL Childs-Disney, HS Haniff… - Journal of medicinal …, 2020 - ACS Publications
RNA offers nearly unlimited potential as a target for small molecule chemical probes and
lead medicines. Many RNAs fold into structures that can be selectively targeted with small …

A cross-linking approach to map small molecule-RNA binding sites in cells

SP Velagapudi, Y Li, MD Disney - Bioorganic & medicinal chemistry letters, 2019 - Elsevier
Methods to identify RNAs bound by small molecules in cells are sparse. Herein, an advance
to identify the direct RNA targets of small molecules in cells is described. The approach …

Targeting RNA with small molecules to capture opportunities at the intersection of chemistry, biology, and medicine

MD Disney - Journal of the American Chemical Society, 2019 - ACS Publications
The biology of healthy and disease-affected cells is often mediated by RNA structures,
desirable targets for small molecule chemical probes and lead medicines. Although …

[HTML][HTML] Covalent small-molecule-RNA complex formation enables cellular profiling of small-molecule-RNA interactions

L Guan, MD Disney - Angewandte Chemie (International ed. in …, 2013 - ncbi.nlm.nih.gov
Covalent adduct formation between small molecules and DNA has been an effective
therapeutic strategy for cancer.[1] However, analogous approaches for disease-associated …