Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes

N Beerenwinkel, M Daumer, M Oette… - Nucleic acids …, 2003 - academic.oup.com
Therapeutic success of anti-HIV therapies is limited by the development of drug resistant
viruses. These genetic variants display complex mutational patterns in their pol gene, which …

Diversity and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype

N Beerenwinkel, B Schmidt, H Walter… - Proceedings of the …, 2002 - National Acad Sciences
Drug resistance testing has been shown to be beneficial for clinical management of HIV type
1 infected patients. Whereas phenotypic assays directly measure drug resistance, the …

The calibrated population resistance tool: standardized genotypic estimation of transmitted HIV-1 drug resistance

RJ Gifford, TF Liu, SY Rhee, M Kiuchi, S Hue… - …, 2009 - academic.oup.com
The calibrated population resistance (CPR) tool is a web-accessible program for performing
standardized genotypic estimation of transmitted HIV-1 drug resistance. The program is …

Genotypic predictors of human immunodeficiency virus type 1 drug resistance

SY Rhee, J Taylor, G Wadhera… - Proceedings of the …, 2006 - National Acad Sciences
Understanding the genetic basis of HIV-1 drug resistance is essential to developing new
antiretroviral drugs and optimizing the use of existing drugs. This understanding, however, is …

A genotypic drug resistance interpretation algorithm that significantly predicts therapy response in HIV-1-infected patients

K Van Laethem, A De Luca, A Antinori… - Antiviral …, 2002 - journals.sagepub.com
Objectives The development of a genotypic drug resistance interpretation algorithm, and the
evaluation of its power to predict therapy outcome. Design A rule-based algorithm was …

Drug-resistance genotyping in HIV-1 therapy: the VIRAD APT randomi sed controlled trial

J Durant, P Clevenbergh, P Halfon, P Delgiudice… - The Lancet, 1999 - thelancet.com
Background Growing evidence has linked HIV-1 resistance mutations and drug failure. The
use of genotypic-resistance analysis to assist therapeutic decision-making in patients failing …

Prediction of HIV-1 drug susceptibility phenotype from the viral genotype using linear regression modeling

H Vermeiren, E Van Craenenbroeck, P Alen… - Journal of virological …, 2007 - Elsevier
Linear regression modeling on a database of HIV-1 genotypes and phenotypes was applied
to predict the HIV-1 resistance phenotype from the viral genotype. In this approach, the …

Discrepant results in the interpretation of HIV‐1 drug‐resistance genotypic data among widely used algorithms

GH Kijak, AE Rubio, SE Pampuro, C Zala… - HIV …, 2003 - Wiley Online Library
Objectives The aim of this study was to assess the concordance on the interpretation of HIV‐
1 drug‐resistance genotypic data by three widely used algorithms: Stanford University …

Prevalence of antiretroviral drug resistance mutations in chronically HIV–infected, treatment-naive patients: implications for routine resistance screening before …

RM Novak, L Chen, RD MacArthur… - Clinical infectious …, 2005 - academic.oup.com
Background. The prevalence of drug resistance among persons with newly acquired human
immunodeficiency virus (HIV) infection is well documented. However, it is unclear to what …

Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics

D Kühnert, R Kouyos, G Shirreff, J Pečerska… - PLoS …, 2018 - journals.plos.org
Drug resistant HIV is a major threat to the long-term efficacy of antiretroviral treatment.
Around 10% of ART-naïve patients in Europe are infected with drug-resistant HIV type 1 …