A fully automated approach to spike sorting

JE Chung, JF Magland, AH Barnett, VM Tolosa… - Neuron, 2017 - cell.com
Understanding the detailed dynamics of neuronal networks will require the simultaneous
measurement of spike trains from hundreds of neurons (or more). Currently, approaches to …

SpikeForest, reproducible web-facing ground-truth validation of automated neural spike sorters

J Magland, JJ Jun, E Lovero, AJ Morley, CL Hurwitz… - Elife, 2020 - elifesciences.org
Spike sorting is a crucial step in electrophysiological studies of neuronal activity. While many
spike sorting packages are available, there is little consensus about which are most …

Quality metrics to accompany spike sorting of extracellular signals

DN Hill, SB Mehta, D Kleinfeld - Journal of Neuroscience, 2011 - Soc Neuroscience
Studies of neuronal activity throughout the brain predominantly rely on extracellular
recordings of spiking activity. These records often contain action potentials from more than …

[HTML][HTML] Continuing progress of spike sorting in the era of big data

D Carlson, L Carin - Current opinion in neurobiology, 2019 - Elsevier
Highlights•Novel devices are posing challenges to existing spike sorting pipelines.•Spike
sorting methodology is expanding to handle thousands to millions of neurons.•Multi-stage …

Mearec: a fast and customizable testbench simulator for ground-truth extracellular spiking activity

AP Buccino, GT Einevoll - Neuroinformatics, 2021 - Springer
When recording neural activity from extracellular electrodes, both in vivo and in vitro, spike
sorting is a required and very important processing step that allows for identification of single …

A spike sorting toolbox for up to thousands of electrodes validated with ground truth recordings in vitro and in vivo

P Yger, GLB Spampinato, E Esposito, B Lefebvre… - Elife, 2018 - elifesciences.org
In recent years, multielectrode arrays and large silicon probes have been developed to
record simultaneously between hundreds and thousands of electrodes packed with a high …

Solving the spike sorting problem with Kilosort

M Pachitariu, S Sridhar, C Stringer - BioRxiv, 2023 - biorxiv.org
Spike sorting is the computational process of extracting the firing times of single neurons
from recordings of local electrical fields. This is an important but hard problem in …

[HTML][HTML] Past, present and future of spike sorting techniques

HG Rey, C Pedreira, RQ Quiroga - Brain research bulletin, 2015 - Elsevier
Spike sorting is a crucial step to extract information from extracellular recordings. With new
recording opportunities provided by the development of new electrodes that allow …

[HTML][HTML] How many neurons can we see with current spike sorting algorithms?

C Pedreira, J Martinez, MJ Ison, RQ Quiroga - Journal of neuroscience …, 2012 - Elsevier
Recent studies highlighted the disagreement between the typical number of neurons
observed with extracellular recordings and the ones to be expected based on anatomical …

Spike sorting with Kilosort4

M Pachitariu, S Sridhar, J Pennington, C Stringer - Nature Methods, 2024 - nature.com
Spike sorting is the computational process of extracting the firing times of single neurons
from recordings of local electrical fields. This is an important but hard problem in …