Principles and methods of integrative genomic analyses in cancer

VN Kristensen, OC Lingjærde, HG Russnes… - Nature Reviews …, 2014 - nature.com
Combined analyses of molecular data, such as DNA copy-number alteration, mRNA and
protein expression, point to biological functions and molecular pathways being deregulated …

[HTML][HTML] Multi-omics approaches in cancer research with applications in tumor subtyping, prognosis, and diagnosis

O Menyhárt, B Győrffy - Computational and structural biotechnology journal, 2021 - Elsevier
While cost-effective high-throughput technologies provide an increasing amount of data, the
analyses of single layers of data seldom provide causal relations. Multi-omics data …

Integrative analysis of the cancer transcriptome

DR Rhodes, AM Chinnaiyan - Nature genetics, 2005 - nature.com
DNA microarrays have been widely applied to the study of human cancer, delineating
myriad molecular subtypes of cancer, many of which are associated with distinct biological …

Expanding the computational toolbox for mining cancer genomes

L Ding, MC Wendl, JF McMichael… - Nature Reviews …, 2014 - nature.com
High-throughput DNA sequencing has revolutionized the study of cancer genomics with
numerous discoveries that are relevant to cancer diagnosis and treatment. The latest …

From single level analysis to multi-omics integrative approaches: a powerful strategy towards the precision oncology

MEG Cantafio, K Grillone, D Caracciolo… - The Road from …, 2019 - taylorfrancis.com
This chapter discusses general concepts on the generation of omics data, along with
available strategies for multi-omics data analysis and integration in the context of clinical …

Genomics and proteomics: emerging technologies in clinical cancer research

CH Chung, S Levy, P Chaurand, DP Carbone - Critical reviews in oncology …, 2007 - Elsevier
Fueled by the complete genomic data acquired from the human genome project and the
desperate clinical need of comprehensive analytical tools to study a heterogeneous disease …

[HTML][HTML] A comprehensive infrastructure for big data in cancer research: accelerating cancer research and precision medicine

IV Hinkson, TM Davidsen, JD Klemm… - Frontiers in cell and …, 2017 - frontiersin.org
Advancements in next-generation sequencing and other-omics technologies are
accelerating the detailed molecular characterization of individual patient tumors, and driving …

Analysis of next-generation genomic data in cancer: accomplishments and challenges

L Ding, MC Wendl, DC Koboldt… - Human molecular …, 2010 - academic.oup.com
The application of next-generation sequencing technology has produced a transformation in
cancer genomics, generating large data sets that can be analyzed in different ways to …

Cancer systems biology: embracing complexity to develop better anticancer therapeutic strategies

W Du, O Elemento - Oncogene, 2015 - nature.com
The transformation of normal cells into cancer cells and maintenance of the malignant state
and phenotypes are associated with genetic and epigenetic deregulations, altered cellular …

Translating cancer genomes and transcriptomes for precision oncology

S Roychowdhury… - CA: a cancer journal for …, 2016 - Wiley Online Library
Understanding the molecular landscape of cancer has facilitated the development of
diagnostic, prognostic, and predictive biomarkers for clinical oncology. Developments in …