A systematic approach to assessing the clinical significance of genetic variants

H Duzkale, J Shen, H McLaughlin, A Alfares… - Clinical …, 2013 - Wiley Online Library
Molecular genetic testing informs diagnosis, prognosis, and risk assessment for patients and
their family members. Recent advances in low‐cost, high‐throughput DNA sequencing and …

Characterizing genetic variants for clinical action

EM Ramos, C Din‐Lovinescu, JS Berg… - American Journal of …, 2014 - Wiley Online Library
Genome‐wide association studies, DNA sequencing studies, and other genomic studies are
finding an increasing number of genetic variants associated with clinical phenotypes that …

[HTML][HTML] The challenge of comprehensive and consistent sequence variant interpretation between clinical laboratories

MG Pepin, ML Murray, S Bailey, D Leistritz-Kessler… - Genetics in …, 2016 - Elsevier
Purpose Genetic testing has shifted from academic laboratories with expertise in specific
genes to commercial laboratories that offer tests of a diverse array of genes. The purpose of …

[HTML][HTML] Recommendations for the collection and use of multiplexed functional data for clinical variant interpretation

H Gelman, JN Dines, J Berg, AH Berger, S Brnich… - Genome Medicine, 2019 - Springer
Variants of uncertain significance represent a massive challenge to medical genetics.
Multiplexed functional assays, in which the functional effects of thousands of genomic …

[HTML][HTML] Medical genomics: The intricate path from genetic variant identification to clinical interpretation

B Quintáns, A Ordóñez-Ugalde, P Cacheiro… - Applied & translational …, 2014 - Elsevier
The field of medical genomics involves translating high throughput genetic methods to the
clinic, in order to improve diagnostic efficiency and treatment decision making. Technical …

Computational and experimental methods for classifying variants of unknown clinical significance

M Spielmann, M Kircher - Molecular Case Studies, 2022 - molecularcasestudies.cshlp.org
The increase in sequencing capacity, reduction in costs, and national and international
coordinated efforts have led to the widespread introduction of next-generation sequencing …

Clinical interpretation of sequence variants

J Zhang, Y Yao, H He, J Shen - Current protocols in human …, 2020 - Wiley Online Library
Clinical interpretation of DNA sequence variants is a critical step in reporting clinical genetic
testing results. Application of next‐generation sequencing technology in molecular genetic …

[HTML][HTML] ClinGen Pathogenicity Calculator: a configurable system for assessing pathogenicity of genetic variants

RY Patel, N Shah, AR Jackson, R Ghosh, P Pawliczek… - Genome Medicine, 2017 - Springer
Background The success of the clinical use of sequencing based tests (from single gene to
genomes) depends on the accuracy and consistency of variant interpretation. Aiming to …

ClinVar: public archive of interpretations of clinically relevant variants

MJ Landrum, JM Lee, M Benson, G Brown… - Nucleic acids …, 2016 - academic.oup.com
Abstract ClinVar (https://www. ncbi. nlm. nih. gov/clinvar/) at the National Center for
Biotechnology Information (NCBI) is a freely available archive for interpretations of clinical …

[PDF][PDF] Practice guidelines for the evaluation of pathogenicity and the reporting of sequence variants in clinical molecular genetics

Y Wallis, S Payne, C McAnulty… - … Science and the …, 2013 - genomicseducation.hee.nhs.uk
With the increased demand for molecular genetic testing there has been a marked change
in the scale and sensitivity of molecular genetic analysis within the service environment …