An interspecific fungal hybrid reveals cross-kingdom rules for allopolyploid gene expression patterns

MP Cox, T Dong, GG Shen, Y Dalvi, DB Scott… - PLoS …, 2014 - journals.plos.org
Polyploidy, a state in which the chromosome complement has undergone an increase, is a
major force in evolution. Understanding the consequences of polyploidy has received much …

Genomic expression dominance in allopolyploids

RA Rapp, JA Udall, JF Wendel - BMC biology, 2009 - Springer
Background Allopolyploid speciation requires rapid evolutionary reconciliation of two
diverged genomes and gene regulatory networks. Here we describe global patterns of gene …

Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (Gossypium)

B Chaudhary, L Flagel, RM Stupar, JA Udall… - Genetics, 2009 - academic.oup.com
Polyploidy is an important force in the evolution of flowering plants. Genomic merger and
doubling induce an extensive array of genomic effects, including immediate and long-term …

Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation

LE Flagel, JF Wendel - New Phytologist, 2010 - Wiley Online Library
Here, we describe the evolution of gene expression among a diversified cohort of five
allopolyploid species in the cotton genus (Gossypium). Using this phylogenetic framework …

Parental squabbles and genome expression: lessons from the polyploids

D Pignatta, L Comai - Journal of biology, 2009 - Springer
The merger of evolutionarily diverged genomes to form a new polyploid genetic system can
involve extensive remodeling of gene regulation. A recent paper in BMC Biology provides …

Global deceleration of gene evolution following recent genome hybridizations in fungi

S Sriswasdi, M Takashima, R Manabe… - Genome …, 2016 - genome.cshlp.org
Polyploidization events such as whole-genome duplication and inter-species hybridization
are major evolutionary forces that shape genomes. Although long-term effects of …

Duplicate gene expression in allopolyploid Gossypiumreveals two temporally distinct phases of expression evolution

L Flagel, J Udall, D Nettleton, J Wendel - BMC biology, 2008 - Springer
Background Polyploidy has played a prominent role in shaping the genomic architecture of
the angiosperms. Through allopolyploidization, several modern Gossypium (cotton) species …

In polyploids, one plus one does not equal two

SP Otto - Trends in Ecology & Evolution, 2003 - cell.com
Polyploidization has occurred often in the evolutionary history of eukaryotes, yet we are only
now learning about the genetic and epigenetic events that occur in newly formed polyploids …

Genetic and epigenetic mechanisms for polyploidy and hybridity

ZJ Chen, HH Yu - Polyploid and hybrid genomics, 2013 - Wiley Online Library
Polyploidy can be classified as autopolyploidy (whole‐genome duplication within a species)
and allopolyploidy (duplication of genomes between species). While changes in …

Polyploidy in fungi: evolution after whole-genome duplication

W Albertin, P Marullo - … of the Royal Society B: Biological …, 2012 - royalsocietypublishing.org
Polyploidy is a major evolutionary process in eukaryotes—particularly in plants and, to a
less extent, in animals, wherein several past and recent whole-genome duplication events …