Accurate annotation of human protein-coding small open reading frames
Functional protein-coding small open reading frames (smORFs) are emerging as an
important class of genes. However, the number of translated smORFs in the human genome …
important class of genes. However, the number of translated smORFs in the human genome …
In search of lost small peptides
A large body of evidence indicates that genome annotation pipelines have biased our view
of coding sequences because they generally undersample small proteins and peptides. The …
of coding sequences because they generally undersample small proteins and peptides. The …
Improved identification and analysis of small open reading frame encoded polypeptides
J Ma, JK Diedrich, I Jungreis, C Donaldson… - Analytical …, 2016 - ACS Publications
Computational, genomic, and proteomic approaches have been used to discover
nonannotated protein-coding small open reading frames (smORFs). Some novel smORFs …
nonannotated protein-coding small open reading frames (smORFs). Some novel smORFs …
Extensive translation of small open reading frames revealed by Poly-Ribo-Seq
JL Aspden, YC Eyre-Walker, RJ Phillips, U Amin… - elife, 2014 - elifesciences.org
Thousands of small Open Reading Frames (smORFs) with the potential to encode small
peptides of fewer than 100 amino acids exist in our genomes. However, the number of …
peptides of fewer than 100 amino acids exist in our genomes. However, the number of …
Classification and function of small open reading frames
JP Couso, P Patraquim - Nature reviews Molecular cell biology, 2017 - nature.com
Small open reading frames (smORFs) of 100 codons or fewer are usually—if arbitrarily—
excluded from proteome annotations. Despite this, the genomes of many metazoans …
excluded from proteome annotations. Despite this, the genomes of many metazoans …
[HTML][HTML] A high-resolution map of human RNA translation
Translated small open reading frames (smORFs) can have important regulatory roles and
encode microproteins, yet their genome-wide identification has been challenging. We …
encode microproteins, yet their genome-wide identification has been challenging. We …
Small open reading frames and cellular stress responses
Small open reading frames (smORFs) encoding polypeptides of less than 100 amino acids
in eukaryotes (50 amino acids in prokaryotes) were historically excluded from genome …
in eukaryotes (50 amino acids in prokaryotes) were historically excluded from genome …
Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames
All species continuously evolve short open reading frames (sORFs) that can be templated
for protein synthesis and may provide raw materials for evolutionary adaptation. We …
for protein synthesis and may provide raw materials for evolutionary adaptation. We …
Small open reading frames: beautiful needles in the haystack
The completion of genome sequences from model organisms creates new opportunities and
resources for both basic and applied research. The genome sequence of several bacterial …
resources for both basic and applied research. The genome sequence of several bacterial …
New peptides under the s (ORF) ace of the genome
JI Pueyo, EG Magny, JP Couso - Trends in biochemical sciences, 2016 - cell.com
Hundreds, perhaps thousands of previously unidentified functional small peptides could
exist in most genomes, but these sequences have been generally overlooked. The …
exist in most genomes, but these sequences have been generally overlooked. The …