Accurate annotation of human protein-coding small open reading frames

TF Martinez, Q Chu, C Donaldson, D Tan… - Nature chemical …, 2020 - nature.com
Functional protein-coding small open reading frames (smORFs) are emerging as an
important class of genes. However, the number of translated smORFs in the human genome …

In search of lost small peptides

S Plaza, G Menschaert, F Payre - Annual Review of Cell and …, 2017 - annualreviews.org
A large body of evidence indicates that genome annotation pipelines have biased our view
of coding sequences because they generally undersample small proteins and peptides. The …

Improved identification and analysis of small open reading frame encoded polypeptides

J Ma, JK Diedrich, I Jungreis, C Donaldson… - Analytical …, 2016 - ACS Publications
Computational, genomic, and proteomic approaches have been used to discover
nonannotated protein-coding small open reading frames (smORFs). Some novel smORFs …

Extensive translation of small open reading frames revealed by Poly-Ribo-Seq

JL Aspden, YC Eyre-Walker, RJ Phillips, U Amin… - elife, 2014 - elifesciences.org
Thousands of small Open Reading Frames (smORFs) with the potential to encode small
peptides of fewer than 100 amino acids exist in our genomes. However, the number of …

Classification and function of small open reading frames

JP Couso, P Patraquim - Nature reviews Molecular cell biology, 2017 - nature.com
Small open reading frames (smORFs) of 100 codons or fewer are usually—if arbitrarily—
excluded from proteome annotations. Despite this, the genomes of many metazoans …

[HTML][HTML] A high-resolution map of human RNA translation

SP Chothani, E Adami, AA Widjaja, SR Langley… - Molecular cell, 2022 - cell.com
Translated small open reading frames (smORFs) can have important regulatory roles and
encode microproteins, yet their genome-wide identification has been challenging. We …

Small open reading frames and cellular stress responses

A Khitun, TJ Ness, SA Slavoff - Molecular omics, 2019 - pubs.rsc.org
Small open reading frames (smORFs) encoding polypeptides of less than 100 amino acids
in eukaryotes (50 amino acids in prokaryotes) were historically excluded from genome …

Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames

CL Sandmann, JF Schulz, J Ruiz-Orera, M Kirchner… - Molecular cell, 2023 - cell.com
All species continuously evolve short open reading frames (sORFs) that can be templated
for protein synthesis and may provide raw materials for evolutionary adaptation. We …

Small open reading frames: beautiful needles in the haystack

MA Basrai, P Hieter, JD Boeke - Genome research, 1997 - genome.cshlp.org
The completion of genome sequences from model organisms creates new opportunities and
resources for both basic and applied research. The genome sequence of several bacterial …

New peptides under the s (ORF) ace of the genome

JI Pueyo, EG Magny, JP Couso - Trends in biochemical sciences, 2016 - cell.com
Hundreds, perhaps thousands of previously unidentified functional small peptides could
exist in most genomes, but these sequences have been generally overlooked. The …