A single-cell transcriptome atlas profiles early organogenesis in human embryos

Y Xu, T Zhang, Q Zhou, M Hu, Y Qi, Y Xue, Y Nie… - Nature cell …, 2023 - nature.com
The early window of human embryogenesis is largely a black box for developmental
biologists. Here we probed the cellular diversity of 4–6 week human embryos when …

The single-cell transcriptional landscape of mammalian organogenesis

J Cao, M Spielmann, X Qiu, X Huang, DM Ibrahim… - Nature, 2019 - nature.com
Mammalian organogenesis is a remarkable process. Within a short timeframe, the cells of
the three germ layers transform into an embryo that includes most of the major internal and …

A human cell atlas of fetal gene expression

J Cao, DR O'day, HA Pliner, PD Kingsley, M Deng… - Science, 2020 - science.org
INTRODUCTION A reference atlas of human cell types is a major goal for the field. Here, we
set out to generate single-cell atlases of both gene expression (this study) and chromatin …

[HTML][HTML] Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis

J Dong, Y Hu, X Fan, X Wu, Y Mao, B Hu, H Guo… - Genome biology, 2018 - Springer
Background Organogenesis is crucial for proper organ formation during mammalian
embryonic development. However, the similarities and shared features between different …

Molecular architecture of lineage allocation and tissue organization in early mouse embryo

G Peng, S Suo, G Cui, F Yu, R Wang, J Chen, S Chen… - Nature, 2019 - nature.com
During post-implantation development of the mouse embryo, descendants of the inner cell
mass in the early epiblast transit from the naive to primed pluripotent state. Concurrently …

[HTML][HTML] Systematic reconstruction of cellular trajectories across mouse embryogenesis

C Qiu, J Cao, BK Martin, T Li, IC Welsh, S Srivatsan… - Nature …, 2022 - nature.com
Mammalian embryogenesis is characterized by rapid cellular proliferation and
diversification. Within a few weeks, a single-cell zygote gives rise to millions of cells …

An atlas of rabbit development as a model for single-cell comparative genomics

MLN Ton, D Keitley, B Theeuwes, C Guibentif… - Nature Cell …, 2023 - nature.com
Traditionally, the mouse has been the favoured vertebrate model for biomedical research,
due to its experimental and genetic tractability. However, non-rodent embryological studies …

[HTML][HTML] Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis

T Lohoff, S Ghazanfar, A Missarova, N Koulena… - Nature …, 2022 - nature.com
Molecular profiling of single cells has advanced our knowledge of the molecular basis of
development. However, current approaches mostly rely on dissociating cells from tissues …

[HTML][HTML] Primate gastrulation and early organogenesis at single-cell resolution

J Zhai, J Guo, H Wan, L Qi, L Liu, Z Xiao, L Yan… - Nature, 2022 - nature.com
Our understanding of human early development is severely hampered by limited access to
embryonic tissues. Due to their close evolutionary relationship with humans, nonhuman …

Using single-cell and spatial transcriptomes to understand stem cell lineage specification during early embryo development

G Peng, G Cui, J Ke, N Jing - Annual Review of Genomics and …, 2020 - annualreviews.org
Embryonic development and stem cell differentiation provide a paradigm to understand the
molecular regulation of coordinated cell fate determination and the architecture of tissue …