Dating the molecular clock in fungi–how close are we?

ML Berbee, JW Taylor - Fungal Biology Reviews, 2010 - Elsevier
Integration of fungal evolution with the dates of plate tectonic movements, paleoecology, and
the evolution of plants and animals requires a molecular clock. Imperfect though they may …

Fungi evolved right on track

R Lucking, S Huhndorf, DH Pfister, ER Plata… - Mycologia, 2009 - Taylor & Francis
Dating of fungal divergences with molecular clocks thus far has yielded highly inconsistent
results. The origin of fungi was estimated at between 660 million and up to 2.15 billion y ago …

Dating divergences in the Fungal Tree of Life: review and new analyses

JW Taylor, ML Berbee - Mycologia, 2006 - Taylor & Francis
The collection of papers in this issue of Mycologia documents considerable improvements in
taxon sampling and phylogenetic resolution regarding the Fungal Tree of Life. The new data …

The evolution of methods for establishing evolutionary timescales

PCJ Donoghue, Z Yang - Philosophical Transactions of …, 2016 - royalsocietypublishing.org
The fossil record is well known to be incomplete. Read literally, it provides a distorted view of
the history of species divergence and extinction, because different species have different …

The impact of calibration and clock-model choice on molecular estimates of divergence times

S Duchêne, R Lanfear, SYW Ho - Molecular phylogenetics and evolution, 2014 - Elsevier
Phylogenetic estimates of evolutionary timescales can be obtained from nucleotide
sequence data using the molecular clock. These estimates are important for our …

Calibrating the Tree of Life: fossils, molecules and evolutionary timescales

F Forest - Annals of Botany, 2009 - academic.oup.com
Background Molecular dating has gained ever-increasing interest since the molecular clock
hypothesis was proposed in the 1960s. Molecular dating provides detailed temporal …

Dating the time of origin of major clades: molecular clocks and the fossil record

AB Smith, KJ Peterson - Annual Review of Earth and Planetary …, 2002 - annualreviews.org
▪ Abstract Molecular and paleontological data provide independent means of estimating
when groups of organisms evolved in the geological past, but neither approach can be …

Advances in time estimation methods for molecular data

S Kumar, SB Hedges - Molecular Biology and Evolution, 2016 - academic.oup.com
Molecular dating has become central to placing a temporal dimension on the tree of life.
Methods for estimating divergence times have been developed for over 50 years, beginning …

[HTML][HTML] A multilocus timescale for oomycete evolution estimated under three distinct molecular clock models

NH Matari, JE Blair - BMC Evolutionary Biology, 2014 - Springer
Background Molecular clock methodologies allow for the estimation of divergence times
across a variety of organisms; this can be particularly useful for groups lacking robust fossil …

A Bayesian phylogenetic method to estimate unknown sequence ages

B Shapiro, SYW Ho, AJ Drummond… - Molecular biology …, 2011 - academic.oup.com
Heterochronous data sets comprise molecular sequences sampled at different points in
time. If the temporal range of the sampled sequences is large relative to the rate of mutation …