Advancing targeted protein degradation via multiomics profiling and artificial intelligence

M Duran-Frigola, M Cigler… - Journal of the American …, 2023 - ACS Publications
Only around 20% of the human proteome is considered to be druggable with small-molecule
antagonists. This leaves some of the most compelling therapeutic targets outside the reach …

Identification and selectivity profiling of small-molecule degraders via multi-omics approaches

NS Scholes, C Mayor-Ruiz, GE Winter - Cell Chemical Biology, 2021 - cell.com
The therapeutic modality of targeted protein degradation promises to overcome limitations of
traditional pharmacology. Small-molecule degraders recruit disease-causing proteins to E3 …

Key considerations in targeted protein degradation drug discovery and development

L Qin, H Dai, J Wang - Frontiers in Chemistry, 2022 - frontiersin.org
Targeting proteins' enzymatic functions with small molecule inhibitors, as well as functions of
receptor proteins with small-molecule agonists and antagonists, were the major forms of …

Targeted protein degradation: advances, challenges, and prospects for computational methods

B Mostofian, HJ Martin, A Razavi, S Patel… - Journal of Chemical …, 2023 - ACS Publications
The therapeutic approach of targeted protein degradation (TPD) is gaining momentum due
to its potentially superior effects compared with protein inhibition. Recent advancements in …

Biophysical and computational approaches to study ternary complexes: a 'cooperative relationship'to rationalize targeted protein degradation

JA Ward, C Perez‐Lopez, C Mayor‐Ruiz - ChemBioChem, 2023 - Wiley Online Library
Degraders have illustrated that compound‐induced proximity to E3 ubiquitin ligases can
prompt the ubiquitination and degradation of disease‐relevant proteins. Hence, this …

Critical assessment of targeted protein degradation as a research tool and pharmacological modality

M Kostic, LH Jones - Trends in pharmacological sciences, 2020 - cell.com
Small molecules continue to dominate drug discovery because of their ease of use, lower
cost of manufacturing, and access to intracellular targets. However, despite these …

A tale of two tails: efficient profiling of protein degraders by specific functional and target engagement readouts

AL Chernobrovkin, C Cázares-Körner… - … the Science of Drug …, 2021 - journals.sagepub.com
Targeted protein degradation represents an area of great interest, potentially offering
improvements with respect to dosing, side effects, drug resistance, and reaching …

Targeted protein knockdown using small molecule degraders

K Raina, CM Crews - Current opinion in chemical biology, 2017 - Elsevier
Highlights•Small molecule protein degraders (PROTACs) can target the 'undruggable'
proteome.•Ligands that bind the target anywhere on its surface can be used to make …

Selectivity through Targeted Protein Degradation (TPD) Miniperspective

A Gopalsamy - Journal of Medicinal Chemistry, 2022 - ACS Publications
Targeted protein degradation has become a reliable tool in the medicinal chemist's toolbox,
as seen with rapid progression of PROTACs (proteolysis targeting chimeras) to clinic …

Proteome-scale induced proximity screens reveal highly potent protein degraders and stabilizers

J Poirson, A Dhillon, H Cho, MHY Lam, N Alerasool… - BioRxiv, 2022 - biorxiv.org
Targeted protein degradation and stabilization are promising therapeutic modalities due to
their potency and versatility. However, only few E3 ligases and deubiquitinases have been …