[HTML][HTML] Improving generalization capability of deep learning-based nuclei instance segmentation by non-deterministic train time and deterministic test time stain …

A Mahbod, G Dorffner, I Ellinger, R Woitek… - Computational and …, 2024 - Elsevier
With the advent of digital pathology and microscopic systems that can scan and save whole
slide histological images automatically, there is a growing trend to use computerized …

NuInsSeg: A fully annotated dataset for nuclei instance segmentation in H&E-stained histological images

A Mahbod, C Polak, K Feldmann, R Khan, K Gelles… - Scientific Data, 2024 - nature.com
In computational pathology, automatic nuclei instance segmentation plays an essential role
in whole slide image analysis. While many computerized approaches have been proposed …

Investigating the impact of the bit depth of fluorescence-stained images on the performance of deep learning-based nuclei instance segmentation

A Mahbod, G Schaefer, C Löw, G Dorffner, R Ecker… - Diagnostics, 2021 - mdpi.com
Nuclei instance segmentation can be considered as a key point in the computer-mediated
analysis of histological fluorescence-stained (FS) images. Many computer-assisted …

Nuclei probability and centroid map network for nuclei instance segmentation in histology images

SN Rashid, MM Fraz - Neural Computing and Applications, 2023 - Springer
Nuclei instance segmentation is an integral step in digital pathology workflow as it is a
prerequisite for most downstream tasks such as patient survival analysis, precision …

Gsn-hvnet: A lightweight, multi-task deep learning framework for nuclei segmentation and classification

T Zhao, C Fu, Y Tian, W Song, CW Sham - Bioengineering, 2023 - mdpi.com
Nuclei segmentation and classification are two basic and essential tasks in computer-aided
diagnosis of digital pathology images, and those deep-learning-based methods have …

Instance-aware self-supervised learning for nuclei segmentation

X Xie, J Chen, Y Li, L Shen, K Ma, Y Zheng - Medical Image Computing …, 2020 - Springer
Due to the wide existence and large morphological variances of nuclei, accurate nuclei
instance segmentation is still one of the most challenging tasks in computational pathology …

Which pixel to annotate: a label-efficient nuclei segmentation framework

W Lou, H Li, G Li, X Han, X Wan - IEEE Transactions on …, 2022 - ieeexplore.ieee.org
Recently deep neural networks, which require a large amount of annotated samples, have
been widely applied in nuclei instance segmentation of H&E stained pathology images …

Nuclei instance segmentation and classification in histopathology images with stardist

M Weigert, U Schmidt - 2022 IEEE International Symposium on …, 2022 - ieeexplore.ieee.org
Instance segmentation and classification of nuclei is an impor-tant task in computational
pathology. We show that StarDist, a deep learning nuclei segmentation method originally …

A fast and accurate algorithm for nuclei instance segmentation in microscopy images

Z Cheng, A Qu - IEEE Access, 2020 - ieeexplore.ieee.org
Nuclei instance segmentation within microscopy images is a fundamental task in the
pathology work-flow, based on that the meaningful nuclear features can be extracted and …

A dual decoder u-net-based model for nuclei instance segmentation in hematoxylin and eosin-stained histological images

A Mahbod, G Schaefer, G Dorffner, S Hatamikia… - Frontiers in …, 2022 - frontiersin.org
Even in the era of precision medicine, with various molecular tests based on omics
technologies available to improve the diagnosis process, microscopic analysis of images …