The genomic route to tomato breeding: past, present, and future

Y Wang, C Sun, Z Ye, C Li, S Huang, T Lin - Plant Physiology, 2024 - academic.oup.com
Abstract Over the past 10,000 years, tomato species have undergone both unintentional and
intentional selection to enhance their favorable traits for human consumption and …

[HTML][HTML] Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species

N Li, Q He, J Wang, B Wang, J Zhao, S Huang… - Nature Genetics, 2023 - nature.com
Effective utilization of wild relatives is key to overcoming challenges in genetic improvement
of cultivated tomato, which has a narrow genetic basis; however, current efforts to decipher …

From genome to phenome and back in tomato

Y Ichihashi, NR Sinha - Current opinion in plant biology, 2014 - Elsevier
Highlights•Dynamic changes in genome arrangement in the tomato clade have generated
new genes and gene families.•Heterotropy and heterochrony in gene expression played a …

Genomic analyses provide insights into the history of tomato breeding

T Lin, G Zhu, J Zhang, X Xu, Q Yu, Z Zheng, Z Zhang… - Nature …, 2014 - nature.com
The histories of crop domestication and breeding are recorded in genomes. Although tomato
is a model species for plant biology and breeding, the nature of human selection that altered …

The tomato genome fleshed out

TP Michael, R Alba - Nature Biotechnology, 2012 - nature.com
The tomato genome fleshed out | Nature Biotechnology Skip to main content Thank you for
visiting nature.com. You are using a browser version with limited support for CSS. To obtain the …

Advances in tomato research in the post-genome era

N Menda, SR Strickler, LA Mueller - Plant Biotechnology, 2013 - jstage.jst.go.jp
The tomato (Solanum lycopersicum) draft genome, along with a draft of the wild relative,
Solanum pimpinellifolium, were released in 2012, almost a decade after the International …

Domestication and breeding of tomatoes: what have we gained and what can we gain in the future?

Y Bai, P Lindhout - Annals of botany, 2007 - academic.oup.com
Background It has been shown that a large variation is present and exploitable from wild
Solanum species but most of it is still untapped. Considering the thousands of Solanum …

[HTML][HTML] A high-continuity and annotated tomato reference genome

X Su, B Wang, X Geng, Y Du, Q Yang, B Liang, G Meng… - BMC genomics, 2021 - Springer
Background Genetic and functional genomics studies require a high-quality genome
assembly. Tomato (Solanum lycopersicum), an important horticultural crop, is an ideal …

Functional genomics of tomato: opportunities and challenges in post-genome NGS era

R Kumar, A Khurana - Journal of biosciences, 2014 - Springer
Abstract The Tomato Genome Sequencing Project represented a landmark venture in the
history of sequencing projects where both Sanger's and next-generation sequencing (NGS) …

Genomic databases for tomato

K Yano, K Aoki, D Shibata - Plant biotechnology, 2007 - jstage.jst.go.jp
Tomato (Solanum lycopersicum) is a model plant of the Solanaceae family. Various
biological aspects of tomato have been investigated with molecular biological approaches …