Hybridization-Sensitive Fluorescent Probes for DNA and RNA by a Modular “Click” Approach

J Gebhard, L Hirsch, C Schwechheimer… - Bioconjugate …, 2022 - ACS Publications
Fluorescent DNA probes were prepared in a modular approach using the “click” post-
synthetic modification strategy. The new glycol-based module and DNA building block place …

Interfacing click chemistry with automated oligonucleotide synthesis for the preparation of fluorescent DNA probes containing internal xanthene and cyanine dyes

IK Astakhova, J Wengel - Chemistry–A European Journal, 2013 - Wiley Online Library
Double‐labeled oligonucleotide probes containing fluorophores interacting by energy‐
transfer mechanisms are essential for modern bioanalysis, molecular diagnostics, and in …

Comparison of a nucleosidic vs non-nucleosidic postsynthetic “click” modification of DNA with base-labile fluorescent probes

S Berndl, N Herzig, P Kele, D Lachmann… - Bioconjugate …, 2009 - ACS Publications
The azides 1 and 2 bearing a phenoxazinium and a coumarin fluorophore, respectively,
were applied in postsynthetic “click”-type bioconjugation and coupled to oligonucleotides …

Two‐Factor Fluorogenic Cyanine‐Styryl Dyes with Yellow and Red Fluorescence for Bioorthogonal Labelling of DNA

B Pfeuffer, P Geng, HA Wagenknecht - ChemBioChem, 2024 - Wiley Online Library
An orange‐and a red‐emitting tetrazine‐modified cyanine‐styryl dyes were synthesized for
bioorthogonal labelling of DNA by means of the Diels‐Alder reaction with inverse electron …

Synthesis and optical properties of cyanine dyes as fluorescent DNA base substitutions for live cell imaging

C Holzhauser, S Berndl, F Menacher, M Breunig… - 2010 - Wiley Online Library
The chromophore of thiazole orange (TO) and its derivative TO3 were incorporated
synthetically as base surrogates into oligonucleotides using automated phosphoramidite …

Energy-transfer-based wavelength-shifting DNA probes with “clickable” cyanine dyes

C Holzhauser, MM Rubner… - … & Photobiological Sciences, 2013 - Springer
Photochemical & Photobiological Sciences Page 1 Photochemical & Photobiological Sciences
COMMUNICATION Cite this: Photochem. Photobiol. Sci., 2013, 12, 722 Received 2nd …

Dual fluorophore PNA FIT-probes− extremely responsive and bright hybridization probes for the sensitive detection of DNA and RNA

E Socher, A Knoll, O Seitz - Organic & biomolecular chemistry, 2012 - pubs.rsc.org
Fluorescently labeled oligonucleotides are commonly employed as probes to detect specific
DNA or RNA sequences in homogeneous solution. Useful probes should experience strong …

Key Structural Elements of Unsymmetrical Cyanine Dyes for Highly Sensitive Fluorescence Turn‐On DNA Probes

K Uno, T Sasaki, N Sugimoto, H Ito… - Chemistry–An Asian …, 2017 - Wiley Online Library
Unsymmetrical cyanine dyes, such as thiazole orange, are useful for the detection of nucleic
acids with fluorescence because they dramatically enhance the fluorescence upon binding …

[PDF][PDF] Exciton‐controlled hybridization‐sensitive fluorescent probes: multicolor detection of nucleic acids

S Ikeda, T Kubota, M Yuki, A Okamoto - Angewandte Chemie, 2009 - academia.edu
The design of a fluorescent probe in which the fluorescence is switched off when the probe
does not recognize the target nucleic acid is very important for the establishment of a nucleic …

Sequence dependence of fluorescence emission and quenching of doubly thiazole orange labeled DNA: effective design of a hybridization-sensitive probe

S Ikeda, T Kubota, K Kino, A Okamoto - Bioconjugate chemistry, 2008 - ACS Publications
We have designed a doubly thiazole orange labeled nucleoside showing high fluorescence
intensity for a hybrid with the target DNA and effective quenching for a single-stranded state …