Profiling of extensively diversified plant LINE s reveals distinct plant‐specific subclades
A large fraction of eukaryotic genomes is made up of long interspersed nuclear elements
(LINE s). Due to their capability to create novel copies via error‐prone reverse transcription …
(LINE s). Due to their capability to create novel copies via error‐prone reverse transcription …
Evolutionary conservation, diversity and specificity of LTR‐retrotransposons in flowering plants: Insights from genome‐wide analysis and multi‐specific comparison
The availability of complete or nearly complete genome sequences from several plant
species permits detailed discovery and cross‐species comparison of transposable elements …
species permits detailed discovery and cross‐species comparison of transposable elements …
Leafing through the genomes of our major crop plants: strategies for capturing unique information
AH Paterson - Nature Reviews Genetics, 2006 - nature.com
Crop plants not only have economic significance, but also comprise important botanical
models for evolution and development. This is reflected by the recent increase in the …
models for evolution and development. This is reflected by the recent increase in the …
A comprehensive annotation dataset of intact LTR retrotransposons of 300 plant genomes
LTR retrotransposons (LTR-RTs) are ubiquitous and represent the dominant repeat element
in plant genomes, playing important roles in functional variation, genome plasticity and …
in plant genomes, playing important roles in functional variation, genome plasticity and …
[图书][B] Plant genome diversity volume 1: Plant genomes, their residents, and their evolutionary dynamics
In this timely new 2-volume treatise, experts from around the world have banded together to
produce a first-of-its-kind synopsis of the exciting and fast moving field of plant evolutionary …
produce a first-of-its-kind synopsis of the exciting and fast moving field of plant evolutionary …
BNR – a LINE family from Beta vulgaris– contains a RRM domain in open reading frame 1 and defines a L1 sub‐clade present in diverse plant genomes
We characterized a novel type of plant non‐LTR retrotransposons, identified as the BNR
family, in sugar beet (Beta vulgaris) genomes. Although their ORF2 sequences were similar …
family, in sugar beet (Beta vulgaris) genomes. Although their ORF2 sequences were similar …
Gramene 2013: comparative plant genomics resources
MK Monaco, J Stein, S Naithani, S Wei… - Nucleic acids …, 2014 - academic.oup.com
ABSTRACT Gramene (http://www. gramene. org) is a curated online resource for
comparative functional genomics in crops and model plant species, currently hosting 27 fully …
comparative functional genomics in crops and model plant species, currently hosting 27 fully …
Evolution of plant genome architecture
We have witnessed an explosion in our understanding of the evolution and structure of plant
genomes in recent years. Here, we highlight three important emergent realizations:(1) that …
genomes in recent years. Here, we highlight three important emergent realizations:(1) that …
[PDF][PDF] LTR annotator: automated identification and annotation of LTR retrotransposons in plant genomes
FM You, S Cloutier, Y Shan… - International Journal of …, 2015 - researchgate.net
Long Terminal Repeat transposable elements (LTRs) are a major type of mobile elements
ubiquitous in eukaryotic genomes. They account for a major proportion of many plant …
ubiquitous in eukaryotic genomes. They account for a major proportion of many plant …
Quality control and evaluation of plant epigenomics data
Epigenomics is the study of molecular signatures associated with discrete regions within
genomes, many of which are important for a wide range of nuclear processes. The ability to …
genomes, many of which are important for a wide range of nuclear processes. The ability to …