An effective self-supervised framework for learning expressive molecular global representations to drug discovery
How to produce expressive molecular representations is a fundamental challenge in
artificial intelligence-driven drug discovery. Graph neural network (GNN) has emerged as a …
artificial intelligence-driven drug discovery. Graph neural network (GNN) has emerged as a …
Self-supervised graph transformer on large-scale molecular data
How to obtain informative representations of molecules is a crucial prerequisite in AI-driven
drug design and discovery. Recent researches abstract molecules as graphs and employ …
drug design and discovery. Recent researches abstract molecules as graphs and employ …
A knowledge-guided pre-training framework for improving molecular representation learning
Learning effective molecular feature representation to facilitate molecular property prediction
is of great significance for drug discovery. Recently, there has been a surge of interest in pre …
is of great significance for drug discovery. Recently, there has been a surge of interest in pre …
Interpretable chirality-aware graph neural network for quantitative structure activity relationship modeling in drug discovery
In computer-aided drug discovery, quantitative structure activity relation models are trained
to predict biological activity from chemical structure. Despite the recent success of applying …
to predict biological activity from chemical structure. Despite the recent success of applying …
Pushing the boundaries of molecular representation for drug discovery with the graph attention mechanism
Z Xiong, D Wang, X Liu, F Zhong, X Wan… - Journal of medicinal …, 2019 - ACS Publications
Hunting for chemicals with favorable pharmacological, toxicological, and pharmacokinetic
properties remains a formidable challenge for drug discovery. Deep learning provides us …
properties remains a formidable challenge for drug discovery. Deep learning provides us …
Hierarchical molecular graph self-supervised learning for property prediction
X Zang, X Zhao, B Tang - Communications Chemistry, 2023 - nature.com
Molecular graph representation learning has shown considerable strength in molecular
analysis and drug discovery. Due to the difficulty of obtaining molecular property labels, pre …
analysis and drug discovery. Due to the difficulty of obtaining molecular property labels, pre …
ReLMole: Molecular representation learning based on two-level graph similarities
Molecular representation is a critical part of various prediction tasks for physicochemical
properties of molecules and drug design. As graph notations are common in expressing the …
properties of molecules and drug design. As graph notations are common in expressing the …
Learning graph-level representation for drug discovery
Predicating macroscopic influences of drugs on human body, like efficacy and toxicity, is a
central problem of small-molecule based drug discovery. Molecules can be represented as …
central problem of small-molecule based drug discovery. Molecules can be represented as …
Graphaf: a flow-based autoregressive model for molecular graph generation
Molecular graph generation is a fundamental problem for drug discovery and has been
attracting growing attention. The problem is challenging since it requires not only generating …
attracting growing attention. The problem is challenging since it requires not only generating …
Path-augmented graph transformer network
Much of the recent work on learning molecular representations has been based on Graph
Convolution Networks (GCN). These models rely on local aggregation operations and can …
Convolution Networks (GCN). These models rely on local aggregation operations and can …