De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
We report de novo genome assemblies, transcriptomes, annotations, and methylomes for
the 26 inbreds that serve as the founders for the maize nested association mapping …
the 26 inbreds that serve as the founders for the maize nested association mapping …
The B73 maize genome: complexity, diversity, and dynamics
We report an improved draft nucleotide sequence of the 2.3-gigabase genome of maize, an
important crop plant and model for biological research. Over 32,000 genes were predicted …
important crop plant and model for biological research. Over 32,000 genes were predicted …
A first-generation haplotype map of maize
Maize is an important crop species of high genetic diversity. We identified and genotyped
several million sequence polymorphisms among 27 diverse maize inbred lines and …
several million sequence polymorphisms among 27 diverse maize inbred lines and …
Improved maize reference genome with single-molecule technologies
Complete and accurate reference genomes and annotations provide fundamental tools for
characterization of genetic and functional variation. These resources facilitate the …
characterization of genetic and functional variation. These resources facilitate the …
Maize genome sequencing by methylation filtration
LE Palmer, PD Rabinowicz, AL O'Shaughnessy… - Science, 2003 - science.org
Gene enrichment strategies offer an alternative to sequencing large and repetitive genomes
such as that of maize. We report the generation and analysis of nearly 100,000 …
such as that of maize. We report the generation and analysis of nearly 100,000 …
Enrichment of gene-coding sequences in maize by genome filtration
Approximately 80% of the maize genome comprises highly repetitive sequences
interspersed with single-copy, gene-rich sequences, and standard genome sequencing …
interspersed with single-copy, gene-rich sequences, and standard genome sequencing …
De novo genome assembly and analyses of 12 founder inbred lines provide insights into maize heterosis
B Wang, M Hou, J Shi, L Ku, W Song, C Li, Q Ning… - Nature Genetics, 2023 - nature.com
Hybrid maize displays superior heterosis and contributes over 30% of total worldwide cereal
production. However, the molecular mechanisms of heterosis remain obscure. Here we …
production. However, the molecular mechanisms of heterosis remain obscure. Here we …
Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome
PD Rabinowicz, K Schutz, N Dedhia, C Yordan… - Nature …, 1999 - nature.com
The genomes of higher plants and animals are highly differentiated, and are composed of a
relatively small number of genes and a large fraction of repetitive DNA. The bulk of this …
relatively small number of genes and a large fraction of repetitive DNA. The bulk of this …
Genetic properties of the maize nested association mapping population
MD McMullen, S Kresovich, HS Villeda, P Bradbury… - Science, 2009 - science.org
Maize genetic diversity has been used to understand the molecular basis of phenotypic
variation and to improve agricultural efficiency and sustainability. We crossed 25 diverse …
variation and to improve agricultural efficiency and sustainability. We crossed 25 diverse …
Genome-wide patterns of genetic variation among elite maize inbred lines
We have resequenced a group of six elite maize inbred lines, including the parents of the
most productive commercial hybrid in China. This effort uncovered more than 1,000,000 …
most productive commercial hybrid in China. This effort uncovered more than 1,000,000 …