[HTML][HTML] Spontaneous NF-κB activation by autocrine TNFα signaling: a computational analysis

J Pękalski, PJ Zuk, M Kochańczyk, M Junkin… - PloS one, 2013 - journals.plos.org
NF-κB is a key transcription factor that regulates innate immune response. Its activity is
tightly controlled by numerous feedback loops, including two negative loops mediated by NF …

Understanding NF‐κB signaling via mathematical modeling

R Cheong, A Hoffmann, A Levchenko - Molecular systems biology, 2008 - embopress.org
Mammalian inflammatory signaling, for which NF‐κB is a principal transcription factor, is an
exquisite example of how cellular signaling pathways can be regulated to produce different …

A simple model of NF-κB dynamics reproduces experimental observations

S Zambrano, ME Bianchi, A Agresti - Journal of Theoretical Biology, 2014 - Elsevier
The mathematical modeling of the NF-κ B oscillations has attracted considerable attention in
recent times, but there is a lack of simple models in the literature that can capture the main …

Sources of dynamic variability in NF‐κB signal transduction: A mechanistic model

J Mothes, D Busse, B Kofahl, J Wolf - BioEssays, 2015 - Wiley Online Library
The transcription factor NF‐κB (p65/p50) plays a central role in the coordination of cellular
responses by activating the transcription of numerous target genes. The precise role of the …

IκBε provides negative feedback to control NF-κB oscillations, signaling dynamics, and inflammatory gene expression

JD Kearns, S Basak, SL Werner, CS Huang… - The Journal of cell …, 2006 - rupress.org
NF-κB signaling is known to be critically regulated by the NF-κB–inducible inhibitor protein
IκBα. The resulting negative feedback has been shown to produce a propensity for …

Lessons from mathematically modeling the NF‐κB pathway

S Basak, M Behar, A Hoffmann - Immunological reviews, 2012 - Wiley Online Library
Mathematical modeling has proved to be a critically important approach in the study of many
complex networks and dynamic systems in physics, engineering, chemistry, and biology …

[HTML][HTML] A systematic survey of the response of a model NF-κB signalling pathway to TNFα stimulation

Y Wang, P Paszek, CA Horton, H Yue… - Journal of theoretical …, 2012 - Elsevier
White's lab established that strong, continuous stimulation with tumour necrosis factor-α
(TNFα) can induce sustained oscillations in the subcellular localisation of the transcription …

[HTML][HTML] Single TNFα trimers mediating NF-κ B activation: stochastic robustness of NF-κ B signaling

T Lipniacki, K Puszynski, P Paszek, AR Brasier… - BMC …, 2007 - Springer
Abstract Background The NF-κ B regulatory network controls innate immune response by
transducing variety of pathogen-derived and cytokine stimuli into well defined single-cell …

[HTML][HTML] First responders shape a prompt and sharp NF-κB-mediated transcriptional response to TNF-α

S Zambrano, A Loffreda, E Carelli, G Stefanelli… - IScience, 2020 - cell.com
Nuclear factor (NF)-κB controls the transcriptional response to inflammatory signals by
translocating into the nucleus, but we lack a single-cell characterization of the resulting …

[HTML][HTML] Oscillation dynamics underlie functional switching of NF-κB for B-cell activation

K Inoue, H Shinohara, M Behar, N Yumoto… - NPJ Systems Biology …, 2016 - nature.com
Transcription factor nuclear factor kappa B (NF-κB) shows cooperative switch-like activation
followed by prolonged oscillatory nuclear translocation in response to extracellular stimuli …