[HTML][HTML] Full-spike deep mutational scanning helps predict the evolutionary success of SARS-CoV-2 clades
B Dadonaite, J Brown, TE McMahon, AG Farrell… - bioRxiv, 2023 - ncbi.nlm.nih.gov
SARS-CoV-2 variants acquire mutations in spike that promote immune evasion and impact
other properties that contribute to viral fitness such as ACE2 receptor binding and cell entry …
other properties that contribute to viral fitness such as ACE2 receptor binding and cell entry …
The SARS-CoV-2 Spike mutation D614G increases entry fitness across a range of ACE2 levels, directly outcompetes the wild type, and is preferentially incorporated …
Early in the current pandemic, the D614G mutation arose in the Spike protein of SARS-CoV-
2 and quickly became the dominant variant globally. Mounting evidence suggests D614G …
2 and quickly became the dominant variant globally. Mounting evidence suggests D614G …
[HTML][HTML] Deep mutational scans of XBB. 1.5 and BQ. 1.1 reveal ongoing epistatic drift during SARS-CoV-2 evolution
AL Taylor, TN Starr - PLoS Pathogens, 2023 - journals.plos.org
Substitutions that fix between SARS-CoV-2 variants can transform the mutational landscape
of future evolution via epistasis. For example, large epistatic shifts in mutational effects …
of future evolution via epistasis. For example, large epistatic shifts in mutational effects …
Predictive profiling of SARS-CoV-2 variants by deep mutational learning
The continual evolution of the severe acute respiratory syndrome coronavirus-2 (SARS-CoV-
2) and the emergence of variants that show resistance to vaccines and neutralizing …
2) and the emergence of variants that show resistance to vaccines and neutralizing …
[PDF][PDF] Deep mutational learning predicts ACE2 binding and antibody escape to combinatorial mutations in the SARS-CoV-2 receptor-binding domain
The continual evolution of SARS-CoV-2 and the emergence of variants that show resistance
to vaccines and neutralizing antibodies threaten to prolong the COVID-19 pandemic …
to vaccines and neutralizing antibodies threaten to prolong the COVID-19 pandemic …
[HTML][HTML] Deep mutagenesis scanning using whole trimeric SARS-CoV-2 spike highlights the importance of NTD-RBD interactions in determining spike phenotype
R Kugathasan, K Sukhova, M Moshe, P Kellam… - PLoS …, 2023 - journals.plos.org
New variants of SARS-CoV-2 are continually emerging with mutations in spike associated
with increased transmissibility and immune escape. Phenotypic maps can inform the …
with increased transmissibility and immune escape. Phenotypic maps can inform the …
[HTML][HTML] Spike mutation D614G alters SARS-CoV-2 fitness and neutralization susceptibility
A spike protein mutation D614G became dominant in SARS-CoV-2 during the COVID-19
pandemic. However, the mutational impact on viral spread and vaccine efficacy remains to …
pandemic. However, the mutational impact on viral spread and vaccine efficacy remains to …
[HTML][HTML] Signatures in SARS-CoV-2 spike protein conferring escape to neutralizing antibodies
Understanding SARS-CoV-2 evolution and host immunity is critical to control COVID-19
pandemics. At the core is an arms-race between SARS-CoV-2 antibody and angiotensin …
pandemics. At the core is an arms-race between SARS-CoV-2 antibody and angiotensin …
[HTML][HTML] Compensatory epistasis maintains ACE2 affinity in SARS-CoV-2 Omicron BA. 1
The Omicron BA. 1 variant emerged in late 2021 and quickly spread across the world.
Compared to the earlier SARS-CoV-2 variants, BA. 1 has many mutations, some of which …
Compared to the earlier SARS-CoV-2 variants, BA. 1 has many mutations, some of which …
[HTML][HTML] Jointly modeling deep mutational scans identifies shifted mutational effects among SARS-CoV-2 spike homologs
Deep mutational scanning (DMS) is a high-throughput experimental technique that
measures the effects of thousands of mutations to a protein. These experiments can be …
measures the effects of thousands of mutations to a protein. These experiments can be …
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