Automating HIV drug resistance genotyping with RECall, a freely accessible sequence analysis tool
CK Woods, CJ Brumme, TF Liu, CKS Chui… - Journal of clinical …, 2012 - Am Soc Microbiol
Genotypic HIV drug resistance testing is routinely used to guide clinical decisions. While
genotyping methods can be standardized, a slow, labor-intensive, and subjective manual …
genotyping methods can be standardized, a slow, labor-intensive, and subjective manual …
Human immunodeficiency virus type 1 drug resistance testing: a comparison of three sequence-based methods
M Erali, S Page, LG Reimer… - Journal of clinical …, 2001 - Am Soc Microbiol
The use of genotypic assays for determining drug resistance in human immunodeficiency
virus (HIV) type 1 (HIV-1)-infected patients is increasing. These tests lack standardization …
virus (HIV) type 1 (HIV-1)-infected patients is increasing. These tests lack standardization …
Comparison of an In Vitro Diagnostic Next-Generation Sequencing Assay with Sanger Sequencing for HIV-1 Genotypic Resistance Testing
PL Tzou, P Ariyaratne, V Varghese, C Lee… - Journal of clinical …, 2018 - Am Soc Microbiol
The ability of next-generation sequencing (NGS) technologies to detect low frequency HIV-1
drug resistance mutations (DRMs) not detected by dideoxynucleotide Sanger sequencing …
drug resistance mutations (DRMs) not detected by dideoxynucleotide Sanger sequencing …
Web resources for HIV type 1 genotypic-resistance test interpretation
TF Liu, RW Shafer - Clinical infectious diseases, 2006 - academic.oup.com
Interpreting the results of plasma human immunodeficiency virus type 1 (HIV-1) genotypic
drug-resistance tests is one of the most difficult tasks facing clinicians caring for HIV-1 …
drug-resistance tests is one of the most difficult tasks facing clinicians caring for HIV-1 …
Comparison of nine resistance interpretation systems for HIV-1 genotyping
M Stürmer, HW Doerr, S Staszewski, W Preiser - 2003 - journals.sagepub.com
HIV-1 genotyping has become a widely accepted tool for monitoring antiretroviral therapy.
However, the benefit of genotyping is limited by the need to interpret the mutation pattern in …
However, the benefit of genotyping is limited by the need to interpret the mutation pattern in …
geno2pheno [ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data
Identifying resistance to antiretroviral drugs is crucial for ensuring the successful treatment of
patients infected with viruses such as human immunodeficiency virus (HIV) or hepatitis C …
patients infected with viruses such as human immunodeficiency virus (HIV) or hepatitis C …
Algorithms for the interpretation of HIV-1 genotypic drug resistance information
J Vercauteren, AM Vandamme - Antiviral research, 2006 - Elsevier
Drug resistance testing has proven its use to guide treatment decisions in HIV-1 infected
patients. Genotyping is the preferred technique for clinical drug resistance testing. Many …
patients. Genotyping is the preferred technique for clinical drug resistance testing. Many …
Next-generation sequencing for HIV drug resistance testing: laboratory, clinical, and implementation considerations
Higher accessibility and decreasing costs of next generation sequencing (NGS), availability
of commercial kits, and development of dedicated analysis pipelines, have allowed an …
of commercial kits, and development of dedicated analysis pipelines, have allowed an …
Multi-laboratory comparison of next-generation to sanger-based sequencing for HIV-1 drug resistance genotyping
NT Parkin, S Avila-Rios, DF Bibby, CJ Brumme… - Viruses, 2020 - mdpi.com
Next-generation sequencing (NGS) is increasingly used for HIV-1 drug resistance
genotyping. NGS methods have the potential for a more sensitive detection of low …
genotyping. NGS methods have the potential for a more sensitive detection of low …
HIV-1 genotypic drug resistance testing: digging deep, reaching wide?
K Van Laethem, K Theys, AM Vandamme - Current opinion in virology, 2015 - Elsevier
Highlights•Technological innovations enable the global roll-out of drug resistance
surveillance.•Next-generation sequencing provides an answer for simultaneous resistance …
surveillance.•Next-generation sequencing provides an answer for simultaneous resistance …