Nucleosomal embedding reshapes the dynamics of abasic sites
Apurinic/apyrimidinic (AP) sites are the most common DNA lesions, which benefit from a
most efficient repair by the base excision pathway. The impact of losing a nucleobase on the …
most efficient repair by the base excision pathway. The impact of losing a nucleobase on the …
A dynamic view of the interaction of histone tails with clustered abasic sites in a nucleosome core particle
Apurinic/apyrimidinic sites are the most common forms of DNA damage under physiological
conditions, yet their structural and dynamical behavior within nucleosome core particles has …
conditions, yet their structural and dynamical behavior within nucleosome core particles has …
[PDF][PDF] Local DNA sequence controls asymmetry of DNA unwrapping from nucleosome core particles
AW Mauney, JM Tokuda, LM Gloss, O Gonzalez… - Biophysical journal, 2018 - cell.com
DNA is tightly wrapped around histone proteins in nucleosome core particles (NCPs) yet
must become accessible for processing in the cell. This accessibility, a key component of …
must become accessible for processing in the cell. This accessibility, a key component of …
Correlation of bistranded clustered abasic DNA lesion processing with structural and dynamic DNA helix distortion
Clustered apurinic/apyrimidinic (AP; abasic) DNA lesions produced by ionizing radiation are
by far more cytotoxic than isolated AP lesion entities. The structure and dynamics of a series …
by far more cytotoxic than isolated AP lesion entities. The structure and dynamics of a series …
Nucleosome Histone Tail Conformation and Dynamics: Impacts of Lysine Acetylation and a Nearby Minor Groove Benzo[a]pyrene-Derived Lesion
Histone tails in nucleosomes play critical roles in regulation of many biological processes,
including chromatin compaction, transcription, and DNA repair. Moreover, post-translational …
including chromatin compaction, transcription, and DNA repair. Moreover, post-translational …
Conformational Dynamics of the Nucleosomal Histone H2B Tails Revealed by Molecular Dynamics Simulations
Epigenetic modifications of histone N-terminal tails play a critical role in regulating the
chromatin structure and biological processes such as transcription and DNA repair. One of …
chromatin structure and biological processes such as transcription and DNA repair. One of …
Rapid DNA–protein cross-linking and strand scission by an abasic site in a nucleosome core particle
JT Sczepanski, RS Wong… - Proceedings of the …, 2010 - National Acad Sciences
Apurinic/apyrimidinic (AP) sites are ubiquitous DNA lesions that are highly mutagenic and
cytotoxic if not repaired. In addition, clusters of two or more abasic lesions within one to two …
cytotoxic if not repaired. In addition, clusters of two or more abasic lesions within one to two …
Chromatin unfolding by epigenetic modifications explained by dramatic impairment of internucleosome interactions: a multiscale computational study
R Collepardo-Guevara, G Portella… - Journal of the …, 2015 - ACS Publications
Histone tails and their epigenetic modifications play crucial roles in gene expression
regulation by altering the architecture of chromatin. However, the structural mechanisms by …
regulation by altering the architecture of chromatin. However, the structural mechanisms by …
Differences in the access of lesions to the nucleotide excision repair machinery in nucleosomes
In nucleosomes, the access of DNA lesions to nucleotide excision repair is hindered by
histone proteins. However, evidence that the nature of the DNA lesions may play a role in …
histone proteins. However, evidence that the nature of the DNA lesions may play a role in …
Partial unwrapping and histone tail dynamics in nucleosome revealed by coarse-grained molecular simulations
H Kenzaki, S Takada - PLoS computational biology, 2015 - journals.plos.org
Nucleosomes, basic units of chromatin, are known to show spontaneous DNA unwrapping
dynamics that are crucial for transcriptional activation, but its structural details are yet to be …
dynamics that are crucial for transcriptional activation, but its structural details are yet to be …