Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability

J Sollier, CT Stork, ML García-Rubio, RD Paulsen… - Molecular cell, 2014 - cell.com
R-loops, consisting of an RNA-DNA hybrid and displaced single-stranded DNA, are
physiological structures that regulate various cellular processes occurring on chromatin …

Defining R-loop classes and their contributions to genome instability

D Castillo-Guzman, F Chédin - DNA repair, 2021 - Elsevier
R-loops are non-B DNA structures that form during transcription when the nascent RNA
anneals to the template DNA strand forming a RNA: DNA hybrid. Understanding the …

Sensing R-loop-associated DNA damage to safeguard genome stability

C Rinaldi, P Pizzul, MP Longhese… - Frontiers in Cell and …, 2021 - frontiersin.org
DNA transcription and replication are two essential physiological processes that can turn
into a threat for genome integrity when they compete for the same DNA substrate. During …

Transcription-coupled nucleotide excision repair: new insights revealed by genomic approaches

M Duan, RM Speer, J Ulibarri, KJ Liu, P Mao - DNA repair, 2021 - Elsevier
Elongation of RNA polymerase II (Pol II) is affected by many factors including DNA damage.
Bulky damage, such as lesions caused by ultraviolet (UV) radiation, arrests Pol II and …

R-loops: targets for nuclease cleavage and repeat instability

CH Freudenreich - Current genetics, 2018 - Springer
R-loops form when transcribed RNA remains bound to its DNA template to form a stable
RNA: DNA hybrid. Stable R-loops form when the RNA is purine-rich, and are further …

[HTML][HTML] R loops: from physiological to pathological roles

T García-Muse, A Aguilera - Cell, 2019 - cell.com
DNA-RNA hybrids play a physiological role in cellular processes, but often, they represent
non-scheduled co-transcriptional structures with a negative impact on transcription …

R-loop-mediated genome instability in mRNA cleavage and polyadenylation mutants

PC Stirling, YA Chan, SW Minaker… - Genes & …, 2012 - genesdev.cshlp.org
Genome instability via RNA: DNA hybrid-mediated R loops has been observed in mutants
involved in various aspects of transcription and RNA processing. The prevalence of this …

DNA repair in mammalian cells: Transcription-coupled DNA repair: directing your effort where it's most needed

S Tornaletti - Cellular and Molecular Life Sciences, 2009 - Springer
Arrest of transcription at sites of DNA damage represents a strong signal for apoptosis. To
overcome the impasse represented by transcription complexes arrested at sites of damage …

UAP56/DDX39B is a major cotranscriptional RNA–DNA helicase that unwinds harmful R loops genome-wide

C Pérez-Calero, A Bayona-Feliu, X Xue… - Genes & …, 2020 - genesdev.cshlp.org
Nonscheduled R loops represent a major source of DNA damage and replication stress.
Cells have different ways to prevent R-loop accumulation. One mechanism relies on the …

RNA/DNA hybrid interactome identifies DXH9 as a molecular player in transcriptional termination and R-loop-associated DNA damage

A Cristini, M Groh, MS Kristiansen, N Gromak - Cell reports, 2018 - cell.com
R-loops comprise an RNA/DNA hybrid and displaced single-stranded DNA. They play
important biological roles and are implicated in pathology. Even so, proteins recognizing …