Modeling gene regulatory networks for cell fate specification
A WARMFLASH, AR DINNER - Statistical Mechanics of Cellular …, 2009 - books.google.com
Many cellular systems exist in more than one state. Two of the simplest and best-
characterized examples are bacteriophage A, which can be in the lytic or lysogenic state …
characterized examples are bacteriophage A, which can be in the lytic or lysogenic state …
Modelling cell lineage using a meta-Boolean tree model with a relation to gene regulatory networks
JÅ Larsson, N Wadströmer, O Hermanson… - Journal of theoretical …, 2011 - Elsevier
A cell lineage is the ancestral relationship between a group of cells that originate from a
single founder cell. For example, in the embryo of the nematode Caenorhabditis elegans an …
single founder cell. For example, in the embryo of the nematode Caenorhabditis elegans an …
How to deal with large models?
WS Hlavacek - Molecular Systems Biology, 2009 - embopress.org
The regulatory systems that allow cells to adapt to their environments are exceedingly
complex, and although we know a great deal about the intricate mechanistic details of many …
complex, and although we know a great deal about the intricate mechanistic details of many …
Structural requirements and discrimination of cell differentiation networks
C Breindl, D Schittler, S Waldherr, F Allgöwer - IFAC Proceedings Volumes, 2011 - Elsevier
Mathematical models of stem cell differentiation are commonly based upon the concept of
subsequent cell fate decisions, each controlled by a gene regulatory network. These …
subsequent cell fate decisions, each controlled by a gene regulatory network. These …
Transcriptional regulation of lineage commitment-a stochastic model of cell fate decisions
Molecular mechanisms employed by individual multipotent cells at the point of lineage
commitment remain largely uncharacterized. Current paradigms span from instructive to …
commitment remain largely uncharacterized. Current paradigms span from instructive to …
Modeling cellular variability
B Munsky - Quantitative biology: from molecular to cellular …, 2012 - api.taylorfrancis.com
Phenotypical diversity may arise despite clonal genetics for a number of reasons, many of
which are due to fluctuations in the environment: for example, cells nearer to nutrient …
which are due to fluctuations in the environment: for example, cells nearer to nutrient …
[PDF][PDF] Mathematical modeling of cell-fate specification: from simple to complex epigenetics
Modern biology will never be the same without mathematical and computational tools. Using
mind map with “epigenetics” as the root, we discuss the current advancement in the field of …
mind map with “epigenetics” as the root, we discuss the current advancement in the field of …
Transition state characteristics during cell differentiation
RD Brackston, E Lakatos… - PLoS computational …, 2018 - journals.plos.org
Models describing the process of stem-cell differentiation are plentiful, and may offer insights
into the underlying mechanisms and experimentally observed behaviour. Waddington's …
into the underlying mechanisms and experimentally observed behaviour. Waddington's …
Deterministic and stochastic models of genetic regulatory networks
I Shmulevich, JD Aitchison - Methods in enzymology, 2009 - Elsevier
Traditionally molecular biology research has tended to reduce biological pathways to
composite units studied as isolated parts of the cellular system. With the advent of high …
composite units studied as isolated parts of the cellular system. With the advent of high …
Theory of cell fate
Cell fate decisions are controlled by complex intracellular molecular regulatory networks.
Studies increasingly reveal the scale of this complexity: not only do cell fate regulatory …
Studies increasingly reveal the scale of this complexity: not only do cell fate regulatory …