Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy

B Schuler, EA Lipman, WA Eaton - Nature, 2002 - nature.com
Protein folding is inherently a heterogeneous process because of the very large number of
microscopic pathways that connect the myriad unfolded conformations to the unique …

Single-molecule fluorescence experiments determine protein folding transition path times

HS Chung, K McHale, JM Louis, WA Eaton - Science, 2012 - science.org
The transition path is the tiny fraction of an equilibrium molecular trajectory when a transition
occurs as the free-energy barrier between two states is crossed. It is a single-molecule …

Protein folding studied by single-molecule FRET

B Schuler, WA Eaton - Current opinion in structural biology, 2008 - Elsevier
A complete understanding of a protein-folding mechanism requires description of the
distribution of microscopic pathways that connect the folded and unfolded states. This …

Single-molecule measurement of protein folding kinetics

EA Lipman, B Schuler, O Bakajin, WA Eaton - Science, 2003 - science.org
In order to investigate the behavior of single molecules under conditions far from
equilibrium, we have coupled a microfabricated laminar-flow mixer to a confocal optical …

Watching proteins fold one molecule at a time

E Rhoades, E Gussakovsky… - Proceedings of the …, 2003 - National Acad Sciences
Recent theoretical work suggests that protein folding involves an ensemble of pathways on
a rugged energy landscape. We provide direct evidence for heterogeneous folding …

Single‐molecule fluorescence spectroscopy of protein folding

B Schuler - ChemPhysChem, 2005 - Wiley Online Library
Single‐molecule spectroscopy is an important new approach for studying the intrinsically
heterogeneous process of protein folding. This Review illustrates how different single …

Absolute comparison of simulated and experimental protein-folding dynamics

CD Snow, H Nguyen, VS Pande, M Gruebele - nature, 2002 - nature.com
Protein folding is difficult to simulate with classical molecular dynamics. Secondary structure
motifs such as α-helices and β-hairpins can form in 0.1–10 µs (ref.), whereas small proteins …

Protein folding kinetics: barrier effects in chemical and thermal denaturation experiments

AN Naganathan, U Doshi, V Muñoz - Journal of the American …, 2007 - ACS Publications
Recent experimental work on fast protein folding brings about an intriguing paradox.
Microsecond-folding proteins are supposed to fold near or at the folding speed limit …

Single-molecule studies of protein folding

A Borgia, PM Williams, J Clarke - Annu. Rev. Biochem., 2008 - annualreviews.org
Although protein-folding studies began several decades ago, it is only recently that the tools
to analyze protein folding at the single-molecule level have been developed. Advances in …

Dynamics, energetics, and structure in protein folding

AN Naganathan, U Doshi, A Fung, M Sadqi… - Biochemistry, 2006 - ACS Publications
For many decades, protein folding experimentalists have worked with no information about
the time scales of relevant protein folding motions and without methods for estimating the …