Detecting simultaneous changepoints in multiple sequences

NR Zhang, DO Siegmund, H Ji, JZ Li - Biometrika, 2010 - academic.oup.com
We discuss the detection of local signals that occur at the same location in multiple one-
dimensional noisy sequences, with particular attention to relatively weak signals that may …

Detecting simultaneous variant intervals in aligned sequences

D Siegmund, B Yakir, NR Zhang - 2011 - projecteuclid.org
Given a set of aligned sequences of independent noisy observations, we are concerned with
detecting intervals where the mean values of the observations change simultaneously in a …

Circular binary segmentation for the analysis of array‐based DNA copy number data

AB Olshen, ES Venkatraman, R Lucito, M Wigler - Biostatistics, 2004 - academic.oup.com
DNA sequence copy number is the number of copies of DNA at a region of a genome.
Cancer progression often involves alterations in DNA copy number. Newly developed …

Post-selection inference for changepoint detection algorithms with application to copy number variation data

S Hyun, KZ Lin, M G'Sell, RJ Tibshirani - Biometrics, 2021 - academic.oup.com
Changepoint detection methods are used in many areas of science and engineering, for
example, in the analysis of copy number variation data to detect abnormalities in copy …

A versatile statistical analysis algorithm to detect genome copy number variation

RS Daruwala, A Rudra, H Ostrer… - Proceedings of the …, 2004 - National Acad Sciences
We have developed a versatile statistical analysis algorithm for the detection of genomic
aberrations in human cancer cell lines. The algorithm analyzes genomic data obtained from …

Detection of DNA copy number alterations using penalized least squares regression

T Huang, B Wu, P Lizardi, H Zhao - Bioinformatics, 2005 - academic.oup.com
Motivation: Genomic DNA copy number alterations are characteristic of many human
diseases including cancer. Various techniques and platforms have been proposed to allow …

Whole genome DNA copy number changes identified by high density oligonucleotide arrays

J Huang, W Wei, J Zhang, G Liu, GR Bignell… - Human genomics, 2004 - Springer
Abstract Changes in DNA copy number are one of the hallmarks of the genetic instability
common to most human cancers. Previous micro-array-based methods have been used to …

A statistical change point model approach for the detection of DNA copy number variations in array CGH data

J Chen, YP Wang - IEEE/ACM Transactions on Computational …, 2008 - ieeexplore.ieee.org
Array comparative genomic hybridization (aCGH) provides a high-resolution and high-
throughput technique for screening of copy number variations (CNVs) within the entire …

Detection of gene copy number changes in CGH microarrays using a spatially correlated mixture model

P Broët, S Richardson - Bioinformatics, 2006 - academic.oup.com
Motivation: Comparative genomic hybridization array experiments that investigate gene
copy number changes present new challenges for statistical analysis and call for methods …

Model selection for high-dimensional, multi-sequence change-point problems

NR Zhang, DO Siegmund - Statistica Sinica, 2012 - JSTOR
Change-point models have been widely applied for segmentation of spatial or time-series
data. Some recent applications in genomics motivate multi-sequence change-point models …