Detecting simultaneous changepoints in multiple sequences
We discuss the detection of local signals that occur at the same location in multiple one-
dimensional noisy sequences, with particular attention to relatively weak signals that may …
dimensional noisy sequences, with particular attention to relatively weak signals that may …
Detecting simultaneous variant intervals in aligned sequences
D Siegmund, B Yakir, NR Zhang - 2011 - projecteuclid.org
Given a set of aligned sequences of independent noisy observations, we are concerned with
detecting intervals where the mean values of the observations change simultaneously in a …
detecting intervals where the mean values of the observations change simultaneously in a …
Circular binary segmentation for the analysis of array‐based DNA copy number data
AB Olshen, ES Venkatraman, R Lucito, M Wigler - Biostatistics, 2004 - academic.oup.com
DNA sequence copy number is the number of copies of DNA at a region of a genome.
Cancer progression often involves alterations in DNA copy number. Newly developed …
Cancer progression often involves alterations in DNA copy number. Newly developed …
Post-selection inference for changepoint detection algorithms with application to copy number variation data
Changepoint detection methods are used in many areas of science and engineering, for
example, in the analysis of copy number variation data to detect abnormalities in copy …
example, in the analysis of copy number variation data to detect abnormalities in copy …
A versatile statistical analysis algorithm to detect genome copy number variation
RS Daruwala, A Rudra, H Ostrer… - Proceedings of the …, 2004 - National Acad Sciences
We have developed a versatile statistical analysis algorithm for the detection of genomic
aberrations in human cancer cell lines. The algorithm analyzes genomic data obtained from …
aberrations in human cancer cell lines. The algorithm analyzes genomic data obtained from …
Detection of DNA copy number alterations using penalized least squares regression
Motivation: Genomic DNA copy number alterations are characteristic of many human
diseases including cancer. Various techniques and platforms have been proposed to allow …
diseases including cancer. Various techniques and platforms have been proposed to allow …
Whole genome DNA copy number changes identified by high density oligonucleotide arrays
J Huang, W Wei, J Zhang, G Liu, GR Bignell… - Human genomics, 2004 - Springer
Abstract Changes in DNA copy number are one of the hallmarks of the genetic instability
common to most human cancers. Previous micro-array-based methods have been used to …
common to most human cancers. Previous micro-array-based methods have been used to …
A statistical change point model approach for the detection of DNA copy number variations in array CGH data
Array comparative genomic hybridization (aCGH) provides a high-resolution and high-
throughput technique for screening of copy number variations (CNVs) within the entire …
throughput technique for screening of copy number variations (CNVs) within the entire …
Detection of gene copy number changes in CGH microarrays using a spatially correlated mixture model
P Broët, S Richardson - Bioinformatics, 2006 - academic.oup.com
Motivation: Comparative genomic hybridization array experiments that investigate gene
copy number changes present new challenges for statistical analysis and call for methods …
copy number changes present new challenges for statistical analysis and call for methods …
Model selection for high-dimensional, multi-sequence change-point problems
NR Zhang, DO Siegmund - Statistica Sinica, 2012 - JSTOR
Change-point models have been widely applied for segmentation of spatial or time-series
data. Some recent applications in genomics motivate multi-sequence change-point models …
data. Some recent applications in genomics motivate multi-sequence change-point models …