The 3D genome: from structure to function
TK Mohanta, AK Mishra, A Al-Harrasi - International Journal of Molecular …, 2021 - mdpi.com
The genome is the most functional part of a cell, and genomic contents are organized in a
compact three-dimensional (3D) structure. The genome contains millions of nucleotide …
compact three-dimensional (3D) structure. The genome contains millions of nucleotide …
3D genome organization: a role for phase separation and loop extrusion?
M Stam, M Tark-Dame, P Fransz - Current opinion in plant biology, 2019 - Elsevier
Highlights•The 3D genome organization in plants and animals is very similar.•Distant
regulatory elements and target genes interact through physical interactions.•Chromatin …
regulatory elements and target genes interact through physical interactions.•Chromatin …
Three-dimensional chromosome organization in flowering plants
S Grob - Briefings in Functional Genomics, 2020 - academic.oup.com
Research on plant three-dimensional (3D) genome architecture made rapid progress over
the past 5 years. Numerous Hi-C interaction data sets were generated in a wide range of …
the past 5 years. Numerous Hi-C interaction data sets were generated in a wide range of …
[HTML][HTML] Three-dimensional chromatin architecture in plants–General features and novelties
Research on the three-dimensional (3D) structure of the genome and its distribution within
the nuclear space has made a big leap in the last two decades. Work in the animal field has …
the nuclear space has made a big leap in the last two decades. Work in the animal field has …
Decoding the plant genome: From epigenome to 3D organization
The linear genome of eukaryotes is partitioned into diverse chromatin states and packaged
into a three-dimensional (3D) structure, which has functional implications in DNA replication …
into a three-dimensional (3D) structure, which has functional implications in DNA replication …
Plant 3D genomics: the exploration and application of chromatin organization
Eukaryotic genomes are highly folded for packing into higher‐order chromatin structures in
the nucleus. With the emergence of state‐of‐the‐art chromosome conformation capture …
the nucleus. With the emergence of state‐of‐the‐art chromosome conformation capture …
Technologies for capturing 3D genome architecture in plants
Chromosome conformation capture (3C) and 3C-derived high-throughput methods such as
Hi-C and in situ Hi-C have been applied to capture chromatin conformation in animals and …
Hi-C and in situ Hi-C have been applied to capture chromatin conformation in animals and …
Understanding 3D genome organization and its effect on transcriptional gene regulation under environmental stress in plant: a chromatin perspective
The genome of a eukaryotic organism is comprised of a supra-molecular complex of
chromatin fibers and intricately folded three-dimensional (3D) structures. Chromosomal …
chromatin fibers and intricately folded three-dimensional (3D) structures. Chromosomal …
3D chromatin architecture of large plant genomes determined by local A/B compartments
The spatial organization of the genome plays an important role in the regulation of gene
expression. However, the core structural features of animal genomes, such as topologically …
expression. However, the core structural features of animal genomes, such as topologically …
The matrix revolutions: towards the decoding of the plant chromatin three-dimensional reality
Y Huang, NY Rodriguez-Granados… - Journal of …, 2020 - academic.oup.com
In recent years, we have witnessed a significant increase in studies addressing the three-
dimensional (3D) chromatin organization of the plant nucleus. Important advances in …
dimensional (3D) chromatin organization of the plant nucleus. Important advances in …