A structural biology community assessment of AlphaFold2 applications
Most proteins fold into 3D structures that determine how they function and orchestrate the
biological processes of the cell. Recent developments in computational methods for protein …
biological processes of the cell. Recent developments in computational methods for protein …
[HTML][HTML] Progress at protein structure prediction, as seen in CASP15
A Elofsson - Current Opinion in Structural Biology, 2023 - Elsevier
In Dec 2020, the results of AlphaFold version 2 were presented at CASP14, sparking a
revolution in the field of protein structure predictions. For the first time, a purely …
revolution in the field of protein structure predictions. For the first time, a purely …
[HTML][HTML] Integrative structural biology in the era of accurate structure prediction
Characterizing the three-dimensional structure of macromolecules is central to
understanding their function. Traditionally, structures of proteins and their complexes have …
understanding their function. Traditionally, structures of proteins and their complexes have …
AlphaFold2 and the future of structural biology
P Cramer - Nature structural & molecular biology, 2021 - nature.com
To the Editor—AlphaFold2 is a machine-learning algorithm for protein structure prediction
that has now been used to obtain hundreds of thousands of protein models. The resulting …
that has now been used to obtain hundreds of thousands of protein models. The resulting …
The impact of AlphaFold Protein Structure Database on the fields of life sciences
M Varadi, S Velankar - Proteomics, 2023 - Wiley Online Library
Arguably, 2020 was the year of high‐accuracy protein structure predictions, with AlphaFold
2.0 achieving previously unseen accuracy in the Critical Assessment of Protein Structure …
2.0 achieving previously unseen accuracy in the Critical Assessment of Protein Structure …
AlphaFold 2: why it works and its implications for understanding the relationships of protein sequence, structure, and function
AlphaFold 2 (AF2) was the star of CASP14, the last biannual structure prediction experiment.
Using novel deep learning, AF2 predicted the structures of many difficult protein targets at or …
Using novel deep learning, AF2 predicted the structures of many difficult protein targets at or …
AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination
Artificial intelligence-based protein structure prediction methods such as AlphaFold have
revolutionized structural biology. The accuracies of these predictions vary, however, and …
revolutionized structural biology. The accuracies of these predictions vary, however, and …
AlphaFold2 fails to predict protein fold switching
D Chakravarty, LL Porter - Protein Science, 2022 - Wiley Online Library
AlphaFold2 has revolutionized protein structure prediction by leveraging sequence
information to rapidly model protein folds with atomic‐level accuracy. Nevertheless, previous …
information to rapidly model protein folds with atomic‐level accuracy. Nevertheless, previous …
SPEACH_AF: Sampling protein ensembles and conformational heterogeneity with Alphafold2
RA Stein, HS Mchaourab - PLOS Computational Biology, 2022 - journals.plos.org
The unprecedented performance of Deepmind's Alphafold2 in predicting protein structure in
CASP XIV and the creation of a database of structures for multiple proteomes and protein …
CASP XIV and the creation of a database of structures for multiple proteomes and protein …
AlphaDesign: A de novo protein design framework based on AlphaFold
M Jendrusch, JO Korbel, SK Sadiq - Biorxiv, 2021 - biorxiv.org
De novo protein design is a longstanding fundamental goal of synthetic biology, but has
been hindered by the difficulty in reliable prediction of accurate high-resolution protein …
been hindered by the difficulty in reliable prediction of accurate high-resolution protein …