A transcriptomic (RNA-seq) analysis of genes responsive to both cadmium and arsenic stress in rice root

Y Huang, H Chen, JR Reinfelder, X Liang… - Science of the Total …, 2019 - Elsevier
Abstract Cadmium (Cd) and arsenic (As) are nonessential and toxic elements in rice that
often occur together in contaminated paddy field soils. To understand whether rice has a …

Comparative transcriptome analysis reveals key genes and coordinated mechanisms in two rice cultivars differing in cadmium accumulation

S Zhao, Q Zhang, W Xiao, D Chen, J Hu, N Gao… - Chemosphere, 2023 - Elsevier
Although Cd accumulation varies among rice varieties is recognized, the underlying
mechanisms are not well clarified. In this study, comparative transcriptome analysis were …

Genome‐wide transcriptome analysis of cadmium stress in rice

Y Oono, T Yazawa, H Kanamori… - BioMed Research …, 2016 - Wiley Online Library
Rice growth is severely affected by toxic concentrations of the nonessential heavy metal
cadmium (Cd). To elucidate the molecular basis of the response to Cd stress, we performed …

Comparative transcriptome analysis of arsenate and arsenite stresses in rice seedlings

D Chakrabarty, PK Trivedi, P Misra, M Tiwari, M Shri… - Chemosphere, 2009 - Elsevier
The effect of arsenic (As) exposure on genome-wide expression was examined in rice
(Oryza sativa L., ssp. Indica). A group of defense and stress-responsive genes, transporters …

[HTML][HTML] Comparative physiological and transcriptomic analyses illuminate common mechanisms by which silicon alleviates cadmium and arsenic toxicity in rice …

H Chen, X Liang, X Gong, JR Reinfelder… - Journal of …, 2021 - Elsevier
The inessential heavy metal/loids cadmium (Cd) and arsenic (As), which often co-occur in
polluted paddy soils, are toxic to rice. Silicon (Si) treatment is known to reduce Cd and As …

[HTML][HTML] Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genes

M Tan, D Cheng, Y Yang, G Zhang, M Qin, J Chen… - BMC plant biology, 2017 - Springer
Background The migration of cadmium (Cd) from contaminated soil to rice is a cause for
concern. However, the molecular mechanism underlying the response of rice roots to …

Transcriptome profiling of abiotic stress-responsive genes during cadmium chloride-mediated stress in two indica rice varieties

S Paul, A Roychoudhury - Journal of Plant Growth Regulation, 2018 - Springer
Rice growth and development is highly affected by the excessive concentration of the heavy
metal cadmium (Cd). To elucidate the molecular basis of Cd tolerance, we carried out …

[HTML][HTML] Transcriptome analysis of rice (Oryza sativa L.) shoots responsive to cadmium stress

L Sun, J Wang, K Song, Y Sun, Q Qin, Y Xue - Scientific Reports, 2019 - nature.com
Cadmium (Cd) is highly toxic to living organisms. This study aimed to elucidate the
regulation of gene expression in rice shoots under Cd stress. Rice plants were exposed to 0 …

[HTML][HTML] RNA-Seq analysis of rice roots reveals the involvement of post-transcriptional regulation in response to cadmium stress

F He, Q Liu, L Zheng, Y Cui, Z Shen… - Frontiers in plant …, 2015 - frontiersin.org
Widely-spread cadmium (Cd) pollution in the soil threatens both crop production and human
health. How plants deal with the excess Cd are largely unknown. To evaluate the molecular …

[HTML][HTML] Genome-wide transcriptome analysis reveals that cadmium stress signaling controls the expression of genes in drought stress signal pathways in rice

Y Oono, T Yazawa, Y Kawahara, H Kanamori… - PloS one, 2014 - journals.plos.org
Plant growth is severely affected by toxic concentrations of the non-essential heavy metal
cadmium (Cd). Comprehensive transcriptome analysis by RNA-Seq following cadmium …