[HTML][HTML] miRWalk–database: prediction of possible miRNA binding sites by “walking” the genes of three genomes

H Dweep, C Sticht, P Pandey, N Gretz - Journal of biomedical informatics, 2011 - Elsevier
MicroRNAs are small, non-coding RNA molecules that can complementarily bind to the
mRNA 3′-UTR region to regulate the gene expression by transcriptional repression or …

Tools for sequence-based miRNA target prediction: what to choose?

ÁL Riffo-Campos, I Riquelme… - International journal of …, 2016 - mdpi.com
MicroRNAs (miRNAs) are defined as small non-coding RNAs~ 22 nt in length. They regulate
gene expression at a post-transcriptional level through complementary base pairing with the …

Comprehensive analysis of human microRNA target networks

J Satoh, H Tabunoki - BioData mining, 2011 - Springer
Background MicroRNAs (miRNAs) mediate posttranscriptional regulation of protein-coding
genes by binding to the 3'untranslated region of target mRNAs, leading to translational …

miRDB: an online database for prediction of functional microRNA targets

Y Chen, X Wang - Nucleic acids research, 2020 - academic.oup.com
MicroRNAs (miRNAs) are small noncoding RNAs that act as master regulators in many
biological processes. miRNAs function mainly by downregulating the expression of their …

Trends in the development of miRNA bioinformatics tools

L Chen, L Heikkinen, C Wang, Y Yang… - Briefings in …, 2019 - academic.oup.com
MicroRNAs (miRNAs) are small noncoding RNAs that regulate gene expression via
recognition of cognate sequences and interference of transcriptional, translational or …

miRWalk: an online resource for prediction of microRNA binding sites

C Sticht, C De La Torre, A Parveen, N Gretz - PloS one, 2018 - journals.plos.org
miRWalk is an open-source platform providing an intuitive interface that generates predicted
and validated miRNA-binding sites of known genes of human, mouse, rat, dog and cow. The …

Global correlation analysis for micro-RNA and mRNA expression profiles in human cell lines

Y Ruike, A Ichimura, S Tsuchiya, K Shimizu… - Journal of human …, 2008 - nature.com
Microribonucleic acids (miRNAs) are small noncoding RNAs that negatively regulate gene
expression at the posttranscriptional level. Although considerable progress has been made …

Got target?: computational methods for microRNA target prediction and their extension

H Min, S Yoon - Experimental & molecular medicine, 2010 - nature.com
MicroRNAs (miRNAs) are a class of small RNAs of 19-23 nucleotides that regulate gene
expression through target mRNA degradation or translational gene silencing. The miRNAs …

MirZ: an integrated microRNA expression atlas and target prediction resource

J Hausser, P Berninger, C Rodak… - Nucleic acids …, 2009 - academic.oup.com
MicroRNAs (miRNAs) are short RNAs that act as guides for the degradation and
translational repression of protein-coding mRNAs. A large body of work showed that …

miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes

PWC Hsu, HD Huang, SD Hsu, LZ Lin… - Nucleic acids …, 2006 - academic.oup.com
Recent work has demonstrated that microRNAs (miRNAs) are involved in critical biological
processes by suppressing the translation of coding genes. This work develops an integrated …