An unbiased molecular approach using 3′-UTRs resolves the avian family-level tree of life

H Kuhl, C Frankl-Vilches, A Bakker… - Molecular Biology …, 2021 - academic.oup.com
Presumably, due to a rapid early diversification, major parts of the higher-level phylogeny of
birds are still resolved controversially in different analyses or are considered unresolvable …

Building the avian tree of life using a large-scale, sparse supermatrix

JG Burleigh, RT Kimball, EL Braun - Molecular phylogenetics and evolution, 2015 - Elsevier
Birds are the most diverse tetrapod class, with about 10,000 extant species that represent a
remarkable evolutionary radiation in which most taxa arose during a short period of time …

[HTML][HTML] A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

JE McCormack, MG Harvey, BC Faircloth… - PloS one, 2013 - journals.plos.org
Evolutionary relationships among birds in Neoaves, the clade comprising the vast majority of
avian diversity, have vexed systematists due to the ancient, rapid radiation of numerous …

Phylogenetics of modern birds in the era of genomics

SV Edwards, W Bryan Jennings… - Proceedings of the …, 2005 - royalsocietypublishing.org
In the 14 years since the first higher-level bird phylogenies based on DNA sequence data,
avian phylogenetics has witnessed the advent and maturation of the genomics era, the …

A phylogenomic study of birds reveals their evolutionary history

SJ Hackett, RT Kimball, S Reddy, RCK Bowie… - science, 2008 - science.org
Deep avian evolutionary relationships have been difficult to resolve as a result of a putative
explosive radiation. Our study examined∼ 32 kilobases of aligned nuclear DNA sequences …

Parallel radiations in the primary clades of birds

MG Fain, P Houde - Evolution, 2004 - Wiley Online Library
Abstract Knowledge of avian phylogeny is prerequisite to understanding the circumstances
and timing of the di‐versification of birds and the evolution of morphological, behavioral, and …

Toward resolving deep Neoaves phylogeny: data, signal enhancement, and priors

RC Pratt, GC Gibb, M Morgan-Richards… - Molecular Biology …, 2009 - academic.oup.com
We report three developments toward resolving the challenge of the apparent basal
polytomy of neoavian birds. First, we describe improved conditional down-weighting …

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

RO Prum, JS Berv, A Dornburg, DJ Field, JP Townsend… - Nature, 2015 - nature.com
Although reconstruction of the phylogeny of living birds has progressed tremendously in the
last decade, the evolutionary history of Neoaves—a clade that encompasses nearly all living …

Resolving the avian tree of life from top to bottom: the promise and potential boundaries of the phylogenomic era

EL Braun, J Cracraft, P Houde - Avian genomics in ecology and evolution …, 2019 - Springer
Reconstructing relationships among extant birds (Neornithes) has been one of the most
difficult problems in phylogenetics, and, despite intensive effort, the avian tree of life remains …

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

BC Faircloth, JE McCormack, NG Crawford… - Systematic …, 2012 - academic.oup.com
Although massively parallel sequencing has facilitated large-scale DNA sequencing,
comparisons among distantly related species rely upon small portions of the genome that …