The atomic structure of protein-protein recognition sites
LL Conte, C Chothia, J Janin - Journal of molecular biology, 1999 - Elsevier
The non-covalent assembly of proteins that fold separately is central to many biological
processes, and differs from the permanent macromolecular assembly of protein subunits in …
processes, and differs from the permanent macromolecular assembly of protein subunits in …
A dissection of specific and non-specific protein–protein interfaces
We compare the geometric and physical–chemical properties of interfaces involved in
specific and non-specific protein–protein interactions in crystal structures reported in the …
specific and non-specific protein–protein interactions in crystal structures reported in the …
The interface of protein-protein complexes: analysis of contacts and prediction of interactions
RP Bahadur, M Zacharias - Cellular and Molecular Life Sciences, 2008 - Springer
Specific protein-protein interactions are essential for cellular functions. Experimentally
determined three-dimensional structures of protein-protein complexes offer the possibility to …
determined three-dimensional structures of protein-protein complexes offer the possibility to …
Studies of protein‐protein interfaces: a statistical analysis of the hydrophobic effect
Data sets of 362 structurally nonredundant protein‐protein interfaces and of 57 symmetry‐
related oligomeric interfaces have been used to explore whether the hydrophobic effect that …
related oligomeric interfaces have been used to explore whether the hydrophobic effect that …
Dissecting protein–protein recognition sites
P Chakrabarti, J Janin - Proteins: Structure, Function, and …, 2002 - Wiley Online Library
The recognition sites in 70 pairwise protein–protein complexes of known three‐dimensional
structure are dissected in a set of surface patches by clustering atoms at the interface. When …
structure are dissected in a set of surface patches by clustering atoms at the interface. When …
Revisiting the Voronoi description of protein–protein interfaces
F Cazals, F Proust, RP Bahadur, J Janin - Protein Science, 2006 - Wiley Online Library
We developed a model of macromolecular interfaces based on the Voronoi diagram and the
related alpha‐complex, and we tested its properties on a set of 96 protein–protein …
related alpha‐complex, and we tested its properties on a set of 96 protein–protein …
Protein–protein interactions: hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states …
Energetic hot spots account for a significant portion of the total binding free energy and
correlate with structurally conserved interface residues. Here, we map experimentally …
correlate with structurally conserved interface residues. Here, we map experimentally …
Protein–protein interactions: General trends in the relationship between binding affinity and interfacial buried surface area
Protein–protein interactions play key roles in many cellular processes and their affinities and
specificities are finely tuned to the functions they perform. Here, we present a study on the …
specificities are finely tuned to the functions they perform. Here, we present a study on the …
[PDF][PDF] Macromolecular recognition in the protein data bank
J Janin, F Rodier, P Chakrabarti… - … Section D: Biological …, 2007 - journals.iucr.org
Crystal structures deposited in the Protein Data Bank illustrate the diversity of biological
macromolecular recognition: transient interactions in protein–protein and protein–DNA …
macromolecular recognition: transient interactions in protein–protein and protein–DNA …
On the role of electrostatic interactions in the design of protein–protein interfaces
FB Sheinerman, B Honig - Journal of molecular biology, 2002 - Elsevier
Here, the methods of continuum electrostatics are used to investigate the contribution of
electrostatic interactions to the binding of four protein–protein complexes; barnase–barstar …
electrostatic interactions to the binding of four protein–protein complexes; barnase–barstar …