Building population-specific reference genomes: a case study of vietnamese reference genome

N Dai Thanh, PTM Trang, DT Hai… - … on Knowledge and …, 2015 - ieeexplore.ieee.org
The human reference genome is an essential tool for studying human genomes. The
standard reference genome is constructed from genomes of a few donors. The 1000 …

The human genome project: software challenges and future directions

N Stojanovic - The 3rd ACS/IEEE International Conference …, 2005 - ieeexplore.ieee.org
Summary form only given. The sequencing of the human genome would not have been
possible without software-and, because of the specific nature of this effort, very little of it was …

Assessing ancestral genome reconstruction methods by resampling

J Zhou, F Hu, W Hoskins, J Tang - 2014 IEEE International …, 2014 - ieeexplore.ieee.org
Inference of ancestral or extinct genomes is important in evolutionary biology, cancer
research and many other research areas. Whole-genome data has become readily …

Read-mapping using personalized diploid reference genome for RNA sequencing data reduced bias for detecting allele-specific expression

S Yuan, Z Qin - 2012 IEEE International Conference on …, 2012 - ieeexplore.ieee.org
Next generation sequencing (NGS) technologies have been applied extensively in many
areas of genetics and genomics research. A fundamental problem when comes to analyzing …

[HTML][HTML] An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes

YS Cho, H Kim, HM Kim, S Jho, JH Jun, YJ Lee… - Nature …, 2016 - nature.com
Human genomes are routinely compared against a universal reference. However, this
strategy could miss population-specific and personal genomic variations, which may be …

A method for localizing non-reference sequences to the human genome

BS Chrisman, KM Paskov, C He, JY Jung… - PACIFIC …, 2021 - World Scientific
As the last decade of human genomics research begins to bear the fruit of advancements in
precision medicine, it is important to ensure that genomics' improvements in human health …

[HTML][HTML] Recovery of non-reference sequences missing from the human reference genome

R Li, X Tian, P Yang, Y Fan, M Li, H Zheng, X Wang… - BMC genomics, 2019 - Springer
Background The non-reference sequences (NRS) represent structure variations in human
genome with potential functional significance. However, besides the known insertions, it is …

Notice of Violation of IEEE Publication Principles: Estimating neutral divergence amongst Mammals for Comparative Genomics with Mammalian scope

A Bhatkar, JL Rana - 9th International Conference on …, 2006 - ieeexplore.ieee.org
Notice of Violation of IEEE Publication Principles" Estimating neutral divergence amongst
Mammals for Comparative Genomics with Mammalian Scope" by Anup Bhatkar and JL …

[HTML][HTML] Is it time to change the reference genome?

S Ballouz, A Dobin, JA Gillis - Genome biology, 2019 - Springer
The use of the human reference genome has shaped methods and data across modern
genomics. This has offered many benefits while creating a few constraints. In the following …

[HTML][HTML] Towards a reference genome that captures global genetic diversity

KHY Wong, W Ma, CY Wei, EC Yeh, WJ Lin… - Nature …, 2020 - nature.com
The current human reference genome is predominantly derived from a single individual and
it does not adequately reflect human genetic diversity. Here, we analyze 338 high-quality …