Despite recent advances achieved by application of high-performance computing methods
and novel algorithmic techniques to maximum likelihood (ML)-based inference programs …

Motivation: Phylogenies are increasingly used in all fields of medical and biological
research. Moreover, because of the next-generation sequencing revolution, datasets used …

RAxML-VI-HPC (randomized axelerated maximum likelihood for high performance
computing) is a sequential and parallel program for inference of large phylogenies with …

With the increasing availability of molecular data, maximum likelihood approaches have
gained a new central role in phylogenetic reconstructions. Extremely fast tree-search …

Nonparametric bootstrap has been a widely used tool in phylogenetic analysis to assess the
clade support of phylogenetic trees. However, with the rapidly growing amount of data, this …

The standard bootstrap (SBS), despite being computationally intensive, is widely used in
maximum likelihood phylogenetic analyses. We recently proposed the ultrafast bootstrap …

Motivation: Due to advances in molecular sequencing and the increasingly rapid collection
of molecular data, the field of phyloinformatics is transforming into a computational science …

Abstract raxmlGUI is a graphical user interface to RAxML, one of the most popular and
widely used softwares for phylogenetic inference using maximum likelihood. Here we …

Evolview is an interactive tree visualization tool designed to help researchers in visualizing
phylogenetic trees and in annotating these with additional information. It offers the user with …

Inference of phylogenetic trees under the maximum likelihood (ML) criterion represents a
routine task in biological data analysis. In this unit we describe how to plan analyses and …