CNVs with adaptive potential in Rangifer tarandus: genome architecture and new annotated assembly

J Prunier, A Carrier, I Gilbert, W Poisson… - Life Science …, 2022 - life-science-alliance.org
Rangifer tarandus has experienced recent drastic population size reductions throughout its
circumpolar distribution and preserving the species implies genetic diversity conservation …

Chromosome-level assembly of the Rangifer tarandus genome and validation of cervid and bovid evolution insights

W Poisson, J Prunier, A Carrier, I Gilbert… - BMC genomics, 2023 - Springer
Background Genome assembly into chromosomes facilitates several analyses including
cytogenetics, genomics and phylogenetics. Despite rapid development in bioinformatics …

The Caribou (Rangifer tarandus) Genome

RS Taylor, RL Horn, X Zhang, GB Golding, M Manseau… - Genes, 2019 - mdpi.com
Rangifer tarandus, known as caribou or reindeer, is a widespread circumpolar species
which presents significant variability in their morphology, ecology, and genetics. A genome …

Design and validation of a 63K genome-wide SNP-genotyping platform for caribou/reindeer (Rangifer tarandus)

A Carrier, J Prunier, W Poisson, M Trottier-Lavoie… - BMC genomics, 2022 - Springer
Background Development of large single nucleotide polymorphism (SNP) arrays can make
genomic data promptly available for conservation problematic. Medium and high-density …

To trim or not to trim: effects of read trimming on the De novo genome assembly of a widespread east Asian passerine, the rufous-capped babbler (Cyanoderma …

SF Yang, CW Lu, CT Yao, CM Hung - Genes, 2019 - mdpi.com
Trimming low quality bases from sequencing reads is considered as routine procedure for
genome assembly; however, we know little about its pros and cons. Here, we used empirical …

De novo Phased Genome Assembly, Annotation and Population Genotyping of Alectoris Chukar

H Zhou, X Huang, J Liu, J Ding, K Xu, W Zhu, C He… - Scientific Data, 2024 - nature.com
Abstract The Alectoris Chukar (chukar) is the most geographically widespread partridge
species in the world, demonstrating exceptional adaptability to diverse ecological …

Demographic history and conservation genomics of caribou (Rangifer tarandus) in Québec

MN Dedato, C Robert, J Taillon… - Evolutionary …, 2022 - Wiley Online Library
The loss of genetic diversity is a challenge many species are facing, with genomics being a
potential tool to inform and prioritize decision‐making. Most caribou (Rangifer tarandus) …

Reference genome of the black rail, Laterallus jamaicensis

LA Hall, IJ Wang, M Escalona, E Beraut… - Journal of …, 2023 - academic.oup.com
The black rail, Laterallus jamaicensis, is one of the most secretive and poorly understood
birds in the Americas. Two of its five subspecies breed in North America: the Eastern black …

De Novo Whole-Genome Sequencing and Assembly of the Yellow-Throated Bunting (Emberiza elegans) Provides Insights into Its Evolutionary Adaptation

T Hu, G Chen, Z Xu, S Luo, H Wang, C Li, L Shan… - Animals, 2022 - mdpi.com
Simple Summary We report the genomic sequence of Emberiza elegans for understanding
the evolutionary mechanisms of environmental adaptation and for studying a more effective …

Draft genome of six Cuban Anolis lizards and insights into genetic changes during their diversification

S Kanamori, LM Díaz, A Cádiz, K Yamaguchi… - BMC Ecology and …, 2022 - Springer
Background Detecting genomic variants and their accumulation processes during species
diversification and adaptive radiation is important for understanding the molecular and …