[HTML][HTML] Single-cell lineage tracing of metastatic cancer reveals selection of hybrid EMT states

KP Simeonov, CN Byrns, ML Clark, RJ Norgard… - Cancer cell, 2021 - cell.com
The underpinnings of cancer metastasis remain poorly understood, in part due to a lack of
tools for probing their emergence at high resolution. Here we present macsGESTALT, an …

Single-cell lineages reveal the rates, routes, and drivers of metastasis in cancer xenografts

JJ Quinn, MG Jones, RA Okimoto, S Nanjo, MM Chan… - Science, 2021 - science.org
INTRODUCTION Cancer progression is fundamentally an evolutionary process, involving
multiple distinct steps from oncogenic transformation to metastatic dissemination to …

[HTML][HTML] Spatial CRISPR genomics identifies regulators of the tumor microenvironment

M Dhainaut, SA Rose, G Akturk, A Wroblewska… - Cell, 2022 - cell.com
While CRISPR screens are helping uncover genes regulating many cell-intrinsic processes,
existing approaches are suboptimal for identifying extracellular gene functions, particularly …

Multiplexed detection of proteins, transcriptomes, clonotypes and CRISPR perturbations in single cells

EP Mimitou, A Cheng, A Montalbano, S Hao… - Nature …, 2019 - nature.com
Multimodal single-cell assays provide high-resolution snapshots of complex cell
populations, but are mostly limited to transcriptome plus an additional modality. Here, we …

In vivo profiling of metastatic double knockouts through CRISPR–Cpf1 screens

RD Chow, G Wang, L Ye, A Codina, HR Kim, L Shen… - Nature …, 2019 - nature.com
Systematic investigation of the genetic interactions that influence metastatic potential has
been challenging. Here we developed massively parallel CRISPR–Cpf1/Cas12a crRNA …

Mapping a functional cancer genome atlas of tumor suppressors in mouse liver using AAV-CRISPR–mediated direct in vivo screening

G Wang, RD Chow, L Ye, CD Guzman, X Dai… - Science …, 2018 - science.org
Cancer genomics consortia have charted the landscapes of numerous human cancers.
Whereas some mutations were found in classical oncogenes and tumor suppressors, others …

[HTML][HTML] CRISPR-barcoding for intratumor genetic heterogeneity modeling and functional analysis of oncogenic driver mutations

A Guernet, SK Mungamuri, D Cartier… - Molecular cell, 2016 - cell.com
Intratumor genetic heterogeneity underlies the ability of tumors to evolve and adapt to
different environmental conditions. Using CRISPR/Cas9 technology and specific DNA …

[HTML][HTML] High-throughput single-cell chromatin accessibility CRISPR screens enable unbiased identification of regulatory networks in cancer

SE Pierce, JM Granja, WJ Greenleaf - Nature communications, 2021 - nature.com
Chromatin accessibility profiling can identify putative regulatory regions genome wide;
however, pooled single-cell methods for assessing the effects of regulatory perturbations on …

[HTML][HTML] Genome-wide CRISPR screen in a mouse model of tumor growth and metastasis

S Chen, NE Sanjana, K Zheng, O Shalem, K Lee, X Shi… - Cell, 2015 - cell.com
Genetic screens are powerful tools for identifying genes responsible for diverse phenotypes.
Here we describe a genome-wide CRISPR/Cas9-mediated loss-of-function screen in tumor …

[HTML][HTML] Multiplexed pancreatic genome engineering and cancer induction by transfection-based CRISPR/Cas9 delivery in mice

R Maresch, S Mueller, C Veltkamp, R Öllinger… - Nature …, 2016 - nature.com
Mouse transgenesis has provided fundamental insights into pancreatic cancer, but is limited
by the long duration of allele/model generation. Here we show transfection-based …