FireProt 2.0: web-based platform for the fully automated design of thermostable proteins

M Musil, A Jezik, J Horackova, S Borko… - Briefings in …, 2024 - academic.oup.com
Thermostable proteins find their use in numerous biomedical and biotechnological
applications. However, the computational design of stable proteins often results in single …

FireProt: web server for automated design of thermostable proteins

M Musil, J Stourac, J Bendl, J Brezovsky… - Nucleic acids …, 2017 - academic.oup.com
There is a continuous interest in increasing proteins stability to enhance their usability in
numerous biomedical and biotechnological applications. A number of in silico tools for the …

Stabilizing proteins, simplified: a Rosetta‐based webtool for predicting favorable mutations

DF Thieker, JB Maguire, ST Kudlacek… - Protein …, 2022 - Wiley Online Library
Many proteins have low thermodynamic stability, which can lead to low expression yields
and limit functionality in research, industrial and clinical settings. This article introduces two …

PROTS: A fragment based protein thermo‐stability potential

Y Li, J Zhang, D Tai… - Proteins: Structure …, 2012 - Wiley Online Library
Designing proteins with enhanced thermo‐stability has been a main focus of protein
engineering because of its theoretical and practical significance. Despite extensive studies …

Engineering functional thermostable proteins using ancestral sequence reconstruction

RES Thomson, SE Carrera-Pacheco… - Journal of Biological …, 2022 - ASBMB
Natural proteins are often only slightly more stable in the native state than the denatured
state, and an increase in environmental temperature can easily shift the balance toward …

Protein thermal stability engineering using HoTMuSiC

F Pucci, JM Kwasigroch, M Rooman - Structural bioinformatics: Methods …, 2020 - Springer
The rational design of enzymes is a challenging research field, which plays an important
role in the optimization of a wide series of biotechnological processes. Computational …

FireProt: energy-and evolution-based computational design of thermostable multiple-point mutants

D Bednar, K Beerens, E Sebestova… - PLoS computational …, 2015 - journals.plos.org
There is great interest in increasing proteins' stability to enhance their utility as biocatalysts,
therapeutics, diagnostics and nanomaterials. Directed evolution is a powerful, but …

Structure-and sequence-analysis inspired engineering of proteins for enhanced thermostability

HJ Wijma, RJ Floor, DB Janssen - Current opinion in structural biology, 2013 - Elsevier
Highlights•Targeting critical sites for stability improvement.•Consensus/ancestral sequence
based protein stabilization.•Computational design of thermostability.•Loop grafting and …

PROSS 2: a new server for the design of stable and highly expressed protein variants

JJ Weinstein, A Goldenzweig, SY Hoch… - …, 2021 - academic.oup.com
Many natural and designed proteins are only marginally stable limiting their usefulness in
research and applications. Recently, we described an automated structure and sequence …

Strategies for increasing protein stability

PG Chandler, SS Broendum, BT Riley… - Protein Nanotechnology …, 2020 - Springer
The stability of wild-type proteins is often a hurdle to their practical use in research, industry,
and medicine. The route to engineering stability of a protein of interest lies largely with the …