Visualization of multiple alignments, phylogenies and gene family evolution
Software for visualizing sequence alignments and trees are essential tools for life scientists.
In this review, we describe the major features and capabilities of a selection of stand-alone …
In this review, we describe the major features and capabilities of a selection of stand-alone …
[PDF][PDF] GVis: A Scalable Visualization Framework for Genomic Data.
This paper describes a framework we have developed for the visual analysis of large-scale
phylogeny hierarchies populated with the genomic data of various organisms. This …
phylogeny hierarchies populated with the genomic data of various organisms. This …
Phylo-VISTA: interactive visualization of multiple DNA sequence alignments
Motivation: The power of multi-sequence comparison for biological discovery is well
established. The need for new capabilities to visualize and compare cross-species …
established. The need for new capabilities to visualize and compare cross-species …
ggtreeExtra: compact visualization of richly annotated phylogenetic data
S Xu, Z Dai, P Guo, X Fu, S Liu, L Zhou… - Molecular biology …, 2021 - academic.oup.com
We present the ggtreeExtra package for visualizing heterogeneous data with a phylogenetic
tree in a circular or rectangular layout (https://www. bioconductor. org/packages/ggtreeExtra) …
tree in a circular or rectangular layout (https://www. bioconductor. org/packages/ggtreeExtra) …
Wasabi: an integrated platform for evolutionary sequence analysis and data visualization
A Veidenberg, A Medlar… - Molecular biology and …, 2016 - academic.oup.com
Wasabi is an open source, web-based environment for evolutionary sequence analysis.
Wasabi visualizes sequence data together with a phylogenetic tree within a modern, user …
Wasabi visualizes sequence data together with a phylogenetic tree within a modern, user …
EvolView, an online tool for visualizing, annotating and managing phylogenetic trees
H Zhang, S Gao, MJ Lercher, S Hu… - Nucleic acids …, 2012 - academic.oup.com
EvolView is a web application for visualizing, annotating and managing phylogenetic trees.
First, EvolView is a phylogenetic tree viewer and customization tool; it visualizes trees in …
First, EvolView is a phylogenetic tree viewer and customization tool; it visualizes trees in …
Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees
Z He, H Zhang, S Gao, MJ Lercher… - Nucleic acids …, 2016 - academic.oup.com
Evolview is an online visualization and management tool for customized and annotated
phylogenetic trees. It allows users to visualize phylogenetic trees in various formats …
phylogenetic trees. It allows users to visualize phylogenetic trees in various formats …
[HTML][HTML] GenePalette: a universal software tool for genome sequence visualization and analysis
M Rebeiz, JW Posakony - Developmental biology, 2004 - Elsevier
To make effective use of the growing host of complete genome sequences, biologists must
have easy-to-use software tools that allow them to visualize, analyze, and modify genome …
have easy-to-use software tools that allow them to visualize, analyze, and modify genome …
[HTML][HTML] Dendroscope: An interactive viewer for large phylogenetic trees
Background Research in evolution requires software for visualizing and editing phylogenetic
trees, for increasingly very large datasets, such as arise in expression analysis or …
trees, for increasingly very large datasets, such as arise in expression analysis or …
TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction
JM Chang, P Di Tommaso, V Lefort… - Nucleic acids …, 2015 - academic.oup.com
We present an update to our Galaxy-based web server for processing and visualizing
deeply sequenced data. Its core tool set, deepTools, allows users to perform complete …
deeply sequenced data. Its core tool set, deepTools, allows users to perform complete …