Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response

A Picart-Picolo, S Grob, N Picault, M Franek… - Genome …, 2020 - genome.cshlp.org
Rapid plant genome evolution is crucial to adapt to environmental changes. Chromosomal
rearrangements and gene copy number variation (CNV) are two important tools for genome …

[HTML][HTML] Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

PTGBase: an integrated database to study tandem duplicated genes in plants

J Yu, T Ke, S Tehrim, F Sun, B Liao, W Hua - Database, 2015 - academic.oup.com
Tandem duplication is a wide-spread phenomenon in plant genomes and plays significant
roles in evolution and adaptation to changing environments. Tandem duplicated genes …

[HTML][HTML] The Impact of Genome Triplication on Tandem Gene Evolution in Brassica rapa

L Fang, F Cheng, J Wu, X Wang - Frontiers in plant science, 2012 - frontiersin.org
Whole genome duplication (WGD) and tandem duplication (TD) are both important modes of
gene expansion. However, how WGD influences tandemly duplicated genes is not well …

Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids

MR Woodhouse, F Cheng, JC Pires… - Proceedings of the …, 2014 - National Acad Sciences
Whole-genome duplications happen repeatedly in a typical flowering plant lineage.
Following most ancient tetraploidies, the two subgenomes are distinguishable because one …

Selection for higher gene copy number after different types of plant gene duplications

CM Hudson, EE Puckett, M Bekaert… - Genome Biology and …, 2011 - academic.oup.com
The evolutionary origins of the multitude of duplicate genes in the plant genomes are still
incompletely understood. To gain an appreciation of the potential selective forces acting on …

Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants

R De Smet, KL Adams, K Vandepoele… - Proceedings of the …, 2013 - National Acad Sciences
The importance of gene gain through duplication has long been appreciated. In contrast, the
importance of gene loss has only recently attracted attention. Indeed, studies in organisms …

Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome

C Seoighe, C Gehring - Trends in Genetics, 2004 - cell.com
Multiple ancient genome duplications in Arabidopsis thaliana provide unique opportunities
to assess factors that influence the fates of duplicated genes. We have found that genes …

The evolutionary dynamics of plant duplicate genes

RC Moore, MD Purugganan - Current opinion in plant biology, 2005 - Elsevier
Given the prevalence of duplicate genes and genomes in plant species, the study of their
evolutionary dynamics has been a focus of study in plant evolutionary genetics over the past …

Evolution of gene duplication in plants

N Panchy, M Lehti-Shiu, SH Shiu - Plant physiology, 2016 - academic.oup.com
Ancient duplication events and a high rate of retention of extant pairs of duplicate genes
have contributed to an abundance of duplicate genes in plant genomes. These duplicates …