HTS-Net: an integrated regulome-interactome approach for establishing network regulation models in high-throughput screenings
C Rioualen, Q Da Costa, B Chetrit, E Charafe-Jauffret… - PLoS …, 2017 - journals.plos.org
High-throughput RNAi screenings (HTS) allow quantifying the impact of the deletion of each
gene in any particular function, from virus-host interactions to cell differentiation. However …
gene in any particular function, from virus-host interactions to cell differentiation. However …
web cellHTS2: a web-application for the analysis of high-throughput screening data
O Pelz, M Gilsdorf, M Boutros - BMC bioinformatics, 2010 - Springer
Background The analysis of high-throughput screening data sets is an expanding field in
bioinformatics. High-throughput screens by RNAi generate large primary data sets which …
bioinformatics. High-throughput screens by RNAi generate large primary data sets which …
An integrative approach for a network based meta-analysis of viral RNAi screens
SS Amberkar, L Kaderali - Algorithms for Molecular Biology, 2015 - Springer
Background Big data is becoming ubiquitous in biology, and poses significant challenges in
data analysis and interpretation. RNAi screening has become a workhorse of functional …
data analysis and interpretation. RNAi screening has become a workhorse of functional …
Genomic screening with RNAi: results and challenges
S Mohr, C Bakal, N Perrimon - Annual review of biochemistry, 2010 - annualreviews.org
RNA interference (RNAi) is an effective tool for genome-scale, high-throughput analysis of
gene function. In the past five years, a number of genome-scale RNAi high-throughput …
gene function. In the past five years, a number of genome-scale RNAi high-throughput …
Analysis of cell-based RNAi screens
RNA interference (RNAi) screening is a powerful technology for functional characterization
of biological pathways. Interpretation of RNAi screens requires computational and statistical …
of biological pathways. Interpretation of RNAi screens requires computational and statistical …
Knowledge based identification of essential signaling from genome-scale siRNA experiments
A Bankhead, I Sach, C Ni, N LeMeur, M Kruger… - BMC Systems …, 2009 - Springer
Background A systems biology interpretation of genome-scale RNA interference (RNAi)
experiments is complicated by scope, experimental variability and network signaling …
experiments is complicated by scope, experimental variability and network signaling …
ScreenSifter: analysis and visualization of RNAi screening data
Background RNAi screening is a powerful method to study the genetics of intracellular
processes in metazoans. Technically, the approach has been largely inspired by techniques …
processes in metazoans. Technically, the approach has been largely inspired by techniques …
Morphological profiles of RNAi-induced gene knockdown are highly reproducible but dominated by seed effects
RNA interference and morphological profiling—the measurement of thousands of
phenotypes from individual cells by microscopy and image analysis—are a potentially …
phenotypes from individual cells by microscopy and image analysis—are a potentially …
Factors affecting reproducibility between genome-scale siRNA-based screens
NJ Barrows, CL Sommer… - Journal of …, 2010 - journals.sagepub.com
RNA interference-based screening is a powerful new genomic technology that addresses
gene function en masse. To evaluate factors influencing hit list composition and …
gene function en masse. To evaluate factors influencing hit list composition and …