Nanobody-tethered transposition enables multifactorial chromatin profiling at single-cell resolution

T Stuart, S Hao, B Zhang, L Mekerishvili… - Nature …, 2023 - nature.com
Chromatin states are functionally defined by a complex combination of histone
modifications, transcription factor binding, DNA accessibility and other factors. Current …

Multimodal chromatin profiling using nanobody-based single-cell CUT&Tag

M Bartosovic, G Castelo-Branco - Nature biotechnology, 2023 - nature.com
Probing histone modifications at a single-cell level in thousands of cells has been enabled
by technologies such as single-cell CUT&Tag. Here we describe nano-CUT&Tag (nano-CT) …

Mapping histone modifications in low cell number and single cells using antibody-guided chromatin tagmentation (ACT-seq)

B Carter, WL Ku, JY Kang, G Hu, J Perrie… - Nature …, 2019 - nature.com
Modern next-generation sequencing-based methods have empowered researchers to assay
the epigenetic states of individual cells. Existing techniques for profiling epigenetic marks in …

Scalable single-cell profiling of chromatin modifications with sciCUT&Tag

DH Janssens, JE Greene, SJ Wu, CA Codomo… - Nature …, 2024 - nature.com
Cleavage under targets and tagmentation (CUT&Tag) is an antibody-directed in situ
chromatin profiling strategy that is rapidly replacing immune precipitation-based methods …

Efficient low-cost chromatin profiling with CUT&Tag

HS Kaya-Okur, DH Janssens, JG Henikoff, K Ahmad… - Nature protocols, 2020 - nature.com
Abstract We recently introduced Cleavage Under Targets & Tagmentation (CUT&Tag), an
epigenomic profiling strategy in which antibodies are bound to chromatin proteins in situ in …

Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells

EP Mimitou, CA Lareau, KY Chen… - Nature …, 2021 - nature.com
Recent technological advances have enabled massively parallel chromatin profiling with
scATAC-seq (single-cell assay for transposase accessible chromatin by sequencing). Here …

Chromatin Velocity reveals epigenetic dynamics by single-cell profiling of heterochromatin and euchromatin

M Tedesco, F Giannese, D Lazarević, V Giansanti… - Nature …, 2022 - nature.com
Recent efforts have succeeded in surveying open chromatin at the single-cell level, but high-
throughput, single-cell assessment of heterochromatin and its underlying genomic …

A rapid and robust method for single cell chromatin accessibility profiling

X Chen, RJ Miragaia, KN Natarajan… - Nature …, 2018 - nature.com
The assay for transposase-accessible chromatin using sequencing (ATAC-seq) is widely
used to identify regulatory regions throughout the genome. However, very few studies have …

Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation

S Henikoff, JG Henikoff, HS Kaya-Okur, K Ahmad - Elife, 2020 - elifesciences.org
Chromatin accessibility mapping is a powerful approach to identify potential regulatory
elements. A popular example is ATAC-seq, whereby Tn5 transposase inserts sequencing …

[HTML][HTML] Transposition of native chromatin for multimodal regulatory analysis and personal epigenomics

JD Buenrostro, PG Giresi, LC Zaba, HY Chang… - Nature …, 2013 - ncbi.nlm.nih.gov
Several limitations of current epigenomic technology preclude their use in many
experimental and clinical settings. Here we describe Assay for Transposase Accessible …