Nanobody-tethered transposition enables multifactorial chromatin profiling at single-cell resolution
Chromatin states are functionally defined by a complex combination of histone
modifications, transcription factor binding, DNA accessibility and other factors. Current …
modifications, transcription factor binding, DNA accessibility and other factors. Current …
Multimodal chromatin profiling using nanobody-based single-cell CUT&Tag
M Bartosovic, G Castelo-Branco - Nature biotechnology, 2023 - nature.com
Probing histone modifications at a single-cell level in thousands of cells has been enabled
by technologies such as single-cell CUT&Tag. Here we describe nano-CUT&Tag (nano-CT) …
by technologies such as single-cell CUT&Tag. Here we describe nano-CUT&Tag (nano-CT) …
Mapping histone modifications in low cell number and single cells using antibody-guided chromatin tagmentation (ACT-seq)
Modern next-generation sequencing-based methods have empowered researchers to assay
the epigenetic states of individual cells. Existing techniques for profiling epigenetic marks in …
the epigenetic states of individual cells. Existing techniques for profiling epigenetic marks in …
Scalable single-cell profiling of chromatin modifications with sciCUT&Tag
DH Janssens, JE Greene, SJ Wu, CA Codomo… - Nature …, 2024 - nature.com
Cleavage under targets and tagmentation (CUT&Tag) is an antibody-directed in situ
chromatin profiling strategy that is rapidly replacing immune precipitation-based methods …
chromatin profiling strategy that is rapidly replacing immune precipitation-based methods …
Efficient low-cost chromatin profiling with CUT&Tag
HS Kaya-Okur, DH Janssens, JG Henikoff, K Ahmad… - Nature protocols, 2020 - nature.com
Abstract We recently introduced Cleavage Under Targets & Tagmentation (CUT&Tag), an
epigenomic profiling strategy in which antibodies are bound to chromatin proteins in situ in …
epigenomic profiling strategy in which antibodies are bound to chromatin proteins in situ in …
Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells
EP Mimitou, CA Lareau, KY Chen… - Nature …, 2021 - nature.com
Recent technological advances have enabled massively parallel chromatin profiling with
scATAC-seq (single-cell assay for transposase accessible chromatin by sequencing). Here …
scATAC-seq (single-cell assay for transposase accessible chromatin by sequencing). Here …
Chromatin Velocity reveals epigenetic dynamics by single-cell profiling of heterochromatin and euchromatin
M Tedesco, F Giannese, D Lazarević, V Giansanti… - Nature …, 2022 - nature.com
Recent efforts have succeeded in surveying open chromatin at the single-cell level, but high-
throughput, single-cell assessment of heterochromatin and its underlying genomic …
throughput, single-cell assessment of heterochromatin and its underlying genomic …
A rapid and robust method for single cell chromatin accessibility profiling
The assay for transposase-accessible chromatin using sequencing (ATAC-seq) is widely
used to identify regulatory regions throughout the genome. However, very few studies have …
used to identify regulatory regions throughout the genome. However, very few studies have …
Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation
S Henikoff, JG Henikoff, HS Kaya-Okur, K Ahmad - Elife, 2020 - elifesciences.org
Chromatin accessibility mapping is a powerful approach to identify potential regulatory
elements. A popular example is ATAC-seq, whereby Tn5 transposase inserts sequencing …
elements. A popular example is ATAC-seq, whereby Tn5 transposase inserts sequencing …
[HTML][HTML] Transposition of native chromatin for multimodal regulatory analysis and personal epigenomics
Several limitations of current epigenomic technology preclude their use in many
experimental and clinical settings. Here we describe Assay for Transposase Accessible …
experimental and clinical settings. Here we describe Assay for Transposase Accessible …