A survey of gene prioritization tools for mendelian and complex human diseases

O Zolotareva, M Kleine - Journal of integrative bioinformatics, 2019 - degruyter.com
Modern high-throughput experiments provide us with numerous potential associations
between genes and diseases. Experimental validation of all the discovered associations, let …

Recent approaches to the prioritization of candidate disease genes

NT Doncheva, T Kacprowski… - … : Systems Biology and …, 2012 - Wiley Online Library
Many efforts are still devoted to the discovery of genes involved with specific phenotypes, in
particular, diseases. High‐throughput techniques are thus applied frequently to detect …

An unbiased evaluation of gene prioritization tools

D Börnigen, LC Tranchevent… - …, 2012 - academic.oup.com
Motivation: Gene prioritization aims at identifying the most promising candidate genes
among a large pool of candidates—so as to maximize the yield and biological relevance of …

Chapter 15: disease gene prioritization

Y Bromberg - PLoS computational biology, 2013 - journals.plos.org
Disease-causing aberrations in the normal function of a gene define that gene as a disease
gene. Proving a causal link between a gene and a disease experimentally is expensive and …

RETRACTED ARTICLE: Candidate gene prioritization

A Masoudi-Nejad, A Meshkin, B Haji-Eghrari… - Molecular genetics and …, 2012 - Springer
Candidate gene identification is typically labour intensive, involving laboratory experiments
required to corroborate or disprove any hypothesis for a nominated candidate gene being …

Improved human disease candidate gene prioritization using mouse phenotype

J Chen, H Xu, BJ Aronow, AG Jegga - BMC bioinformatics, 2007 - Springer
Background The majority of common diseases are multi-factorial and modified by genetically
and mechanistically complex polygenic interactions and environmental factors. High …

Computational disease gene prioritization: an appraisal

N Gill, S Singh, TC Aseri - Journal of Computational Biology, 2014 - liebertpub.com
Bioinformatics aids in the understanding of the biological processes of living beings and the
genetic architecture of human diseases. The discovery of disease-related genes improves …

A guide to web tools to prioritize candidate genes

LC Tranchevent, FB Capdevila, D Nitsch… - Briefings in …, 2011 - academic.oup.com
Finding the most promising genes among large lists of candidate genes has been defined
as the gene prioritization problem. It is a recurrent problem in genetics in which genetic …

Evaluation of phenotype-driven gene prioritization methods for Mendelian diseases

X Yuan, J Wang, B Dai, Y Sun, K Zhang… - Briefings in …, 2022 - academic.oup.com
It's challenging work to identify disease-causing genes from the next-generation sequencing
(NGS) data of patients with Mendelian disorders. To improve this situation, researchers have …

In silico gene prioritization by integrating multiple data sources

Y Chen, W Wang, Y Zhou, R Shields, SK Chanda… - PloS one, 2011 - journals.plos.org
Identifying disease genes is crucial to the understanding of disease pathogenesis, and to
the improvement of disease diagnosis and treatment. In recent years, many researchers …