A computational framework to explore large-scale biosynthetic diversity
JC Navarro-Muñoz, N Selem-Mojica… - Nature chemical …, 2020 - nature.com
Genome mining has become a key technology to exploit natural product diversity. Although
initially performed on a single-genome basis, the process is now being scaled up to mine …
initially performed on a single-genome basis, the process is now being scaled up to mine …
Integrated metabolomic–genomic workflows accelerate microbial natural product discovery
The pairing of analytical chemistry with genomic techniques represents a new wave in
natural product chemistry. With an increase in the availability of sequencing and assembly of …
natural product chemistry. With an increase in the availability of sequencing and assembly of …
MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters
With an ever-increasing amount of (meta) genomic data being deposited in sequence
databases,(meta) genome mining for natural product biosynthetic pathways occupies a …
databases,(meta) genome mining for natural product biosynthetic pathways occupies a …
EvoMining reveals the origin and fate of natural product biosynthetic enzymes
N Sélem-Mojica, C Aguilar… - Microbial …, 2019 - microbiologyresearch.org
Natural products (NPs), or specialized metabolites, are important for medicine and
agriculture alike, and for the fitness of the organisms that produce them. NP genome-mining …
agriculture alike, and for the fitness of the organisms that produce them. NP genome-mining …
BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters
Background Genome mining for biosynthetic gene clusters (BGCs) has become an integral
part of natural product discovery. The> 200,000 microbial genomes now publicly available …
part of natural product discovery. The> 200,000 microbial genomes now publicly available …
Genome mining methods to discover bioactive natural products
KD Bauman, KS Butler, BS Moore… - Natural Product …, 2021 - pubs.rsc.org
Covering: 2016 to 2021 With genetic information available for hundreds of thousands of
organisms in publicly accessible databases, scientists have an unprecedented opportunity …
organisms in publicly accessible databases, scientists have an unprecedented opportunity …
A roadmap for natural product discovery based on large-scale genomics and metabolomics
Actinobacteria encode a wealth of natural product biosynthetic gene clusters, whose
systematic study is complicated by numerous repetitive motifs. By combining several metrics …
systematic study is complicated by numerous repetitive motifs. By combining several metrics …
eSNaPD: a versatile, web-based bioinformatics platform for surveying and mining natural product biosynthetic diversity from metagenomes
BVB Reddy, A Milshteyn, Z Charlop-Powers… - Chemistry & biology, 2014 - cell.com
Summary Environmental Surveyor of Natural Product Diversity (eSNaPD) is a web-based
bioinformatics and data aggregation platform that aids in the discovery of gene clusters …
bioinformatics and data aggregation platform that aids in the discovery of gene clusters …
Computational approaches to natural product discovery
MH Medema, MA Fischbach - Nature chemical biology, 2015 - nature.com
Starting with the earliest Streptomyces genome sequences, the promise of natural product
genome mining has been captivating: genomics and bioinformatics would transform …
genome mining has been captivating: genomics and bioinformatics would transform …
Natural product discovery through microbial genome mining
The advent of the genomic era has opened up enormous possibilities for the discovery of
new natural products. Also known as specialized metabolites, these compounds produced …
new natural products. Also known as specialized metabolites, these compounds produced …