A computational framework to explore large-scale biosynthetic diversity

JC Navarro-Muñoz, N Selem-Mojica… - Nature chemical …, 2020 - nature.com
Genome mining has become a key technology to exploit natural product diversity. Although
initially performed on a single-genome basis, the process is now being scaled up to mine …

Integrated metabolomic–genomic workflows accelerate microbial natural product discovery

NE Avalon, AE Murray, BJ Baker - Analytical chemistry, 2022 - ACS Publications
The pairing of analytical chemistry with genomic techniques represents a new wave in
natural product chemistry. With an increase in the availability of sequencing and assembly of …

MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

BR Terlouw, K Blin, JC Navarro-Muñoz… - Nucleic acids …, 2023 - academic.oup.com
With an ever-increasing amount of (meta) genomic data being deposited in sequence
databases,(meta) genome mining for natural product biosynthetic pathways occupies a …

EvoMining reveals the origin and fate of natural product biosynthetic enzymes

N Sélem-Mojica, C Aguilar… - Microbial …, 2019 - microbiologyresearch.org
Natural products (NPs), or specialized metabolites, are important for medicine and
agriculture alike, and for the fitness of the organisms that produce them. NP genome-mining …

BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

SA Kautsar, JJJ van der Hooft, D de Ridder… - …, 2021 - academic.oup.com
Background Genome mining for biosynthetic gene clusters (BGCs) has become an integral
part of natural product discovery. The> 200,000 microbial genomes now publicly available …

Genome mining methods to discover bioactive natural products

KD Bauman, KS Butler, BS Moore… - Natural Product …, 2021 - pubs.rsc.org
Covering: 2016 to 2021 With genetic information available for hundreds of thousands of
organisms in publicly accessible databases, scientists have an unprecedented opportunity …

A roadmap for natural product discovery based on large-scale genomics and metabolomics

JR Doroghazi, JC Albright, AW Goering, KS Ju… - Nature chemical …, 2014 - nature.com
Actinobacteria encode a wealth of natural product biosynthetic gene clusters, whose
systematic study is complicated by numerous repetitive motifs. By combining several metrics …

eSNaPD: a versatile, web-based bioinformatics platform for surveying and mining natural product biosynthetic diversity from metagenomes

BVB Reddy, A Milshteyn, Z Charlop-Powers… - Chemistry & biology, 2014 - cell.com
Summary Environmental Surveyor of Natural Product Diversity (eSNaPD) is a web-based
bioinformatics and data aggregation platform that aids in the discovery of gene clusters …

Computational approaches to natural product discovery

MH Medema, MA Fischbach - Nature chemical biology, 2015 - nature.com
Starting with the earliest Streptomyces genome sequences, the promise of natural product
genome mining has been captivating: genomics and bioinformatics would transform …

Natural product discovery through microbial genome mining

E Kenshole, M Herisse, M Michael, SJ Pidot - Current Opinion in Chemical …, 2021 - Elsevier
The advent of the genomic era has opened up enormous possibilities for the discovery of
new natural products. Also known as specialized metabolites, these compounds produced …