Whole-genome analyses: average nucleotide identity
DR Arahal - Methods in microbiology, 2014 - Elsevier
Average nucleotide identity (ANI) was proposed almost 10 years ago as a means to
compare genetic relatedness among prokaryotic strains. It was found that values around …
compare genetic relatedness among prokaryotic strains. It was found that values around …
OrthoANI: an improved algorithm and software for calculating average nucleotide identity
Species demarcation in Bacteria and Archaea is mainly based on overall genome
relatedness, which serves a framework for modern microbiology. Current practice for …
relatedness, which serves a framework for modern microbiology. Current practice for …
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
Among available genome relatedness indices, average nucleotide identity (ANI) is one of
the most robust measurements of genomic relatedness between strains, and has great …
the most robust measurements of genomic relatedness between strains, and has great …
Improving phylogenies based on average nucleotide identity, incorporating saturation correction and nonparametric bootstrap support
Whole-genome comparisons based on average nucleotide identities (ANI) and the genome-
to-genome distance calculator have risen to prominence in rapidly classifying prokaryotic …
to-genome distance calculator have risen to prominence in rapidly classifying prokaryotic …
A large-scale evaluation of algorithms to calculate average nucleotide identity
Average nucleotide identity (ANI) is a category of computational analysis that can be used to
define species boundaries of Archaea and Bacteria. Calculating ANI usually involves the …
define species boundaries of Archaea and Bacteria. Calculating ANI usually involves the …
Genome-based taxonomic classification
Bacterial populations are routinely characterized based on microscopic examination, colony
formation, and biochemical tests. However, in the recent past, bacterial identification …
formation, and biochemical tests. However, in the recent past, bacterial identification …
The relationship of the whole genome sequence identity to DNA hybridization varies between genera of prokaryotes
X Li, Y Huang, WB Whitman - Antonie van Leeuwenhoek, 2015 - Springer
In the original proposal of Wayne et al.(Int J Syst Bacteriol 37: 463–464, 1987), two
measures of genetic relatedness were proposed to set the boundary for prokaryotic species …
measures of genetic relatedness were proposed to set the boundary for prokaryotic species …
Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity
The average amino acid identity (AAI) is an index of pairwise genomic relatedness, and
multiple studies have proposed its application in prokaryotic taxonomy and related …
multiple studies have proposed its application in prokaryotic taxonomy and related …
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
N Han, Y Qiang, W Zhang - Database, 2016 - academic.oup.com
Background: Early classification of prokaryotes was based solely on phenotypic similarities,
but modern prokaryote characterization has been strongly influenced by advances in …
but modern prokaryote characterization has been strongly influenced by advances in …
Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs
Abstract DNA-DNA hybridization (DDH) is a widely applied wet-lab technique to obtain an
estimate of the overall similarity between the genomes of two organisms. To base the …
estimate of the overall similarity between the genomes of two organisms. To base the …