The Phenix software for automated determination of macromolecular structures

PD Adams, PV Afonine, G Bunkóczi, VB Chen… - Methods, 2011 - Elsevier
X-ray crystallography is a critical tool in the study of biological systems. It is able to provide
information that has been a prerequisite to understanding the fundamentals of life. It is also a …

[HTML][HTML] PHENIX: a comprehensive Python-based system for macromolecular structure solution

PD Adams, PV Afonine, G Bunkóczi… - … Section D: Biological …, 2010 - scripts.iucr.org
Macromolecular X-ray crystallography is routinely applied to understand biological
processes at a molecular level. However, significant time and effort are still required to solve …

[图书][B] Automated structure solution with the PHENIX suite

PH Zwart, PV Afonine, RW Grosse-Kunstleve, LW Hung… - 2008 - Springer
Significant time and effort are often required to solve and complete a macromolecular crystal
structure. The development of automated computational methods for the analysis, solution …

Collaborative Computational Project, number 4: providing programs for protein crystallography

EJ Dodson, M Winn, A Ralph - Methods in enzymology, 1997 - iucr.org
Abstract The CCP4 (Collaborative Computational Project, number 4) aims to provide first a
state-of-the-art suite consisting of a collection of programs plus associated data and …

[HTML][HTML] PHENIX: building new software for automated crystallographic structure determination

PD Adams, RW Grosse-Kunstleve, LW Hung… - … Section D: Biological …, 2002 - iucr.org
Structural genomics seeks to expand rapidly the number of protein structures in order to
extract the maximum amount of information from genomic sequence databases. The advent …

Auto-Rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment

S Panjikar, V Parthasarathy, VS Lamzin… - … Section D: Biological …, 2005 - scripts.iucr.org
The EMBL-Hamburg Automated Crystal Structure Determination Platform is a system that
combines a number of existing macromolecular crystallographic computer programs and …

Advances, interactions, and future developments in the CNS, Phenix, and Rosetta structural biology software systems

PD Adams, D Baker, AT Brunger, R Das… - Annual review of …, 2013 - annualreviews.org
Advances in our understanding of macromolecular structure come from experimental
methods, such as X-ray crystallography, and also computational analysis of the growing …

[HTML][HTML] CCP4i2: the new graphical user interface to the CCP4 program suite

L Potterton, J Agirre, C Ballard, K Cowtan… - … Section D: Structural …, 2018 - scripts.iucr.org
The CCP4 (Collaborative Computational Project, Number 4) software suite for
macromolecular structure determination by X-ray crystallography groups brings together …

The Computational Crystallography Toolbox: crystallographic algorithms in a reusable software framework

RW Grosse-Kunstleve, NK Sauter… - Journal of Applied …, 2002 - scripts.iucr.org
The advent of structural genomics initiatives has led to a pressing need for high-throughput
macromolecular structure determination. To accomplish this, new methods and inevitably …

[HTML][HTML] Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

D Liebschner, PV Afonine, ML Baker… - … Section D: Structural …, 2019 - scripts.iucr.org
Diffraction (X-ray, neutron and electron) and electron cryo-microscopy are powerful methods
to determine three-dimensional macromolecular structures, which are required to …