[HTML][HTML] Detection and quantification of methylation in DNA using solid-state nanopores

J Shim, GI Humphreys, BM Venkatesan, JM Munz… - Scientific reports, 2013 - nature.com
Epigenetic modifications in eukaryotic genomes occur primarily in the form of 5-
methylcytosine (5 mC). These modifications are heavily involved in transcriptional …

Nanopore-based assay for detection of methylation in double-stranded DNA fragments

J Shim, Y Kim, GI Humphreys, AM Nardulli, F Kosari… - ACS …, 2015 - ACS Publications
DNA methylation is an epigenetic modification of DNA in which methyl groups are added at
the 5-carbon position of cytosine. Aberrant DNA methylation, which has been associated …

Single-molecule DNA methylation quantification using electro-optical sensing in solid-state nanopores

T Gilboa, C Torfstein, M Juhasz, A Grunwald… - ACS …, 2016 - ACS Publications
Detection of epigenetic markers, including 5-methylcytosine, is crucial due to their role in
gene expression regulation and due to the mounting evidence of aberrant DNA methylation …

Detection of methylation on dsDNA using nanopores in a MoS 2 membrane

J Shim, S Banerjee, H Qiu, KKH Smithe, D Estrada… - Nanoscale, 2017 - pubs.rsc.org
Methylation at the 5-carbon position of the cytosine nucleotide base in DNA has been shown
to be a reliable diagnostic biomarker for carcinogenesis. Early detection of methylation and …

Nanopore sequencing meets epigenetics

MC Schatz - Nature methods, 2017 - nature.com
Nanopore sequencing meets epigenetics | Nature Methods Skip to main content Thank you for
visiting nature.com. You are using a browser version with limited support for CSS. To obtain …

Detection and mapping of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore MspA

AH Laszlo, IM Derrington… - Proceedings of the …, 2013 - National Acad Sciences
Precise and efficient mapping of epigenetic markers on DNA may become an important
clinical tool for prediction and identification of ailments. Methylated CpG sites are involved in …

[HTML][HTML] Detection and mapping of DNA methylation with 2D material nanopores

H Qiu, A Sarathy, K Schulten, JP Leburton - npj 2D Materials and …, 2017 - nature.com
DNA methylation is an epigenetic modification involving the addition of a methyl group to
DNA, which is heavily involved in gene expression and regulation, thereby critical to the …

DNA methylation profiling in nanochannels

S Fang Lim, A Karpusenko, JJ Sakon, JA Hook… - …, 2011 - pubs.aip.org
We report the profiling of the 5-methyl cytosine distribution within single genomic-sized DNA
molecules at a gene-relevant resolution. This method linearizes and stretches DNA …

[HTML][HTML] Detection of 5-methylcytosine and 5-hydroxymethylcytosine in DNA via host–guest interactions inside α-hemolysin nanopores

T Zeng, L Liu, T Li, Y Li, J Gao, Y Zhao, HC Wu - Chemical science, 2015 - pubs.rsc.org
Cytosine methylation and hydroxymethylation are both important epigenetic modifications of
DNA in mammalian cells. Therefore, profiling DNA (hydroxy) methylation across the genome …

Ultrasensitive and label-free detection of multiple DNA methyltransferases by asymmetric nanopore biosensor

S Zhang, W Shi, KB Li, DM Han, JJ Xu - Analytical Chemistry, 2022 - ACS Publications
DNA methylation is catalyzed by a family of DNA methyltransferases that play crucial roles in
various biological processes. Therefore, an ultrasensitive methyltransferase assay is highly …