The UNITE database for molecular identification of fungi–recent updates and future perspectives

K Abarenkov, RH Nilsson, KH Larsson, IJ Alexander… - The New …, 2010 - JSTOR
Ectomycorrhizal (ECM) fungi are typically examined for taxonomic affiliation through
sequence similarity searches involving the internal transcribed spacer (ITS) region of the …

UNITE: a database providing web‐based methods for the molecular identification of ectomycorrhizal fungi

U Kõljalg, KH Larsson, K Abarenkov… - New …, 2005 - Wiley Online Library
Identification of ectomycorrhizal (ECM) fungi is often achieved through comparisons of
ribosomal DNA internal transcribed spacer (ITS) sequences with accessioned sequences …

How to know the fungi: combining field inventories and DNA-barcoding to document fungal diversity

C Truong, AB Mujic, R Healy, F Kuhar, G Furci… - New Phytologist, 2017 - JSTOR
The fungi kingdom is among the most diverse eukaryotic lineages on Earth with estimates of
several million extant species (O'Brien et al., 2005; Blackwell, 2011; Taylor et al., 2014) …

An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web‐based tool for the exploration of fungal diversity

M Ryberg, E Kristiansson, E Sjökvist… - New …, 2009 - Wiley Online Library
The environmental and distributional data associated with fungal internal transcribed spacer
(ITS) sequences in GenBank are investigated and a new web‐based tool with which these …

Fungal community analysis by high‐throughput sequencing of amplified markers–a user's guide

BD Lindahl, RH Nilsson, L Tedersoo… - New …, 2013 - Wiley Online Library
Novel high‐throughput sequencing methods outperform earlier approaches in terms of
resolution and magnitude. They enable identification and relative quantification of …

How to know unknown fungi: the role of a herbarium

PM Brock, H Döring, MI Bidartondo - New Phytologist, 2009 - Wiley Online Library
The development of a universal approach to the identification of fungi from the environment
is impeded by the limited number and narrow phylogenetic range of the named internal …

Protax‐fungi: a web‐based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences

K Abarenkov, P Somervuo, RH Nilsson… - New …, 2018 - Wiley Online Library
Incompleteness of reference sequence databases and unresolved taxonomic relationships
complicates taxonomic placement of fungal sequences. We developed Protax‐fungi, a …

Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities.

R Henrik Nilsson, L Tedersoo, BD Lindahl… - New …, 2011 - search.ebscohost.com
The article presents proposals regarding the standards on how next-generation sequencing
(NGS) studies for scientific community should be conducted and analyzed. It recommends …

Formal description of sequence-based voucherless Fungi: promises and pitfalls, and how to resolve them

R Lücking, DL Hawksworth - IMA fungus, 2018 - Springer
There is urgent need for a formal nomenclature of sequence-based, voucherless Fungi,
given that environmental sequencing has accumulated more than one billion fungal ITS …

Towards a unified paradigm for sequence‐based identification of fungi

U Kõljalg, RH Nilsson, K Abarenkov, L Tedersoo… - 2013 - Wiley Online Library
The nuclear ribosomal internal transcribed spacer (ITS) region is the formal fungal barcode
and in most cases the marker of choice for the exploration of fungal diversity in …