Critically evaluating the theory and performance of Bayesian analysis of macroevolutionary mixtures
Bayesian analysis of macroevolutionary mixtures (BAMM) has recently taken the study of
lineage diversification by storm. BAMM estimates the diversification-rate parameters …
lineage diversification by storm. BAMM estimates the diversification-rate parameters …
Is BAMM flawed? Theoretical and practical concerns in the analysis of multi-rate diversification models
Bayesian analysis of macroevolutionary mixtures (BAMM) is a statistical framework that uses
reversible jump Markov chain Monte Carlo to infer complex macroevolutionary dynamics of …
reversible jump Markov chain Monte Carlo to infer complex macroevolutionary dynamics of …
Estimating diversification rates for higher taxa: BAMM can give problematic estimates of rates and rate shifts
Estimates of diversification rates are invaluable for many macroevolutionary studies.
Recently, an approach called BAMM (Bayesian Analysis of Macro-evolutionary Mixtures) …
Recently, an approach called BAMM (Bayesian Analysis of Macro-evolutionary Mixtures) …
Likelihood methods for detecting temporal shifts in diversification rates
DL Rabosky - Evolution, 2006 - academic.oup.com
Maximum likelihood is a potentially powerful approach for investigating the tempo of
diversification using molecular phylogenetic data. Likelihood methods distinguish between …
diversification using molecular phylogenetic data. Likelihood methods distinguish between …
A Bayesian approach for detecting the impact of mass‐extinction events on molecular phylogenies when rates of lineage diversification may vary
The paleontological record chronicles numerous episodes of mass extinction that severely
culled the Tree of Life. Biologists have long sought to assess the extent to which these …
culled the Tree of Life. Biologists have long sought to assess the extent to which these …
BAMM tools: an R package for the analysis of evolutionary dynamics on phylogenetic trees
DL Rabosky, M Grundler, C Anderson… - Methods in Ecology …, 2014 - Wiley Online Library
Understanding the dynamics of speciation, extinction and phenotypic evolution is a central
challenge in evolutionary biology. Here, we present BAMM tools, an r package for the …
challenge in evolutionary biology. Here, we present BAMM tools, an r package for the …
Whole-tree methods for detecting differential diversification rates
Prolific cladogenesis, adaptive radiation, species selection, key innovations, and mass
extinctions are a few examples of biological phenomena that lead to differential …
extinctions are a few examples of biological phenomena that lead to differential …
Tip rates, phylogenies and diversification: what are we estimating, and how good are the estimates?
PO Title, DL Rabosky - Methods in Ecology and Evolution, 2019 - Wiley Online Library
Species‐specific diversification rates, or 'tip rates', can be computed quickly from
phylogenies and are widely used to study diversification rate variation in relation to …
phylogenies and are widely used to study diversification rate variation in relation to …
Slowdowns in diversification rates from real phylogenies may not be real
N Cusimano, SS Renner - Systematic biology, 2010 - academic.oup.com
Studies of diversification patterns often find a slowing in lineage accumulation toward the
present. This seemingly pervasive pattern of rate downturns has been taken as evidence for …
present. This seemingly pervasive pattern of rate downturns has been taken as evidence for …
Pulled diversification rates, lineages-through-time plots, and modern macroevolutionary modeling
AJ Helmstetter, S Glemin, J Käfer… - Systematic …, 2022 - academic.oup.com
Estimating time-dependent rates of speciation and extinction from dated phylogenetic trees
of extant species (timetrees), and determining how and why they vary, is key to …
of extant species (timetrees), and determining how and why they vary, is key to …