[HTML][HTML] TreeDyn: towards dynamic graphics and annotations for analyses of trees

F Chevenet, C Brun, AL Bañuls, B Jacq, R Christen - BMC bioinformatics, 2006 - Springer
Background Analyses of biomolecules for biodiversity, phylogeny or structure/function
studies often use graphical tree representations. Many powerful tree editors are now …

[HTML][HTML] ETE: a python Environment for Tree Exploration

J Huerta-Cepas, J Dopazo, T Gabaldón - BMC bioinformatics, 2010 - Springer
Background Many bioinformatics analyses, ranging from gene clustering to phylogenetics,
produce hierarchical trees as their main result. These are used to represent the relationships …

[HTML][HTML] Dendroscope: An interactive viewer for large phylogenetic trees

DH Huson, DC Richter, C Rausch, T Dezulian… - BMC …, 2007 - Springer
Background Research in evolution requires software for visualizing and editing phylogenetic
trees, for increasingly very large datasets, such as arise in expression analysis or …

[HTML][HTML] A reference guide for tree analysis and visualization

GA Pavlopoulos, TG Soldatos, A Barbosa-Silva… - BioData mining, 2010 - Springer
The quantities of data obtained by the new high-throughput technologies, such as
microarrays or ChIP-Chip arrays, and the large-scale OMICS-approaches, such as …

ggtreeExtra: compact visualization of richly annotated phylogenetic data

S Xu, Z Dai, P Guo, X Fu, S Liu, L Zhou… - Molecular biology …, 2021 - academic.oup.com
We present the ggtreeExtra package for visualizing heterogeneous data with a phylogenetic
tree in a circular or rectangular layout (https://www. bioconductor. org/packages/ggtreeExtra) …

Phylo.io : Interactive Viewing and Comparison of Large Phylogenetic Trees on the Web

O Robinson, D Dylus, C Dessimoz - Molecular biology and …, 2016 - academic.oup.com
Phylogenetic trees are pervasively used to depict evolutionary relationships. Increasingly,
researchers need to visualize large trees and compare multiple large trees inferred for the …

PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization

Ł Kreft, A Botzki, F Coppens, K Vandepoele… - …, 2017 - academic.oup.com
Motivation Comparative and evolutionary studies utilize phylogenetic trees to analyze and
visualize biological data. Recently, several web-based tools for the display, manipulation …

Tree Visualization By One Table (tvBOT): a web application for visualizing, modifying and annotating phylogenetic trees

J Xie, Y Chen, G Cai, R Cai, Z Hu… - Nucleic acids …, 2023 - academic.oup.com
Abstract tvBOT is a user-friendly and efficient web application for visualizing, modifying, and
annotating phylogenetic trees. It is highly efficient in data preparation without requiring …

Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees

B Subramanian, S Gao, MJ Lercher, S Hu… - Nucleic acids …, 2019 - academic.oup.com
Evolview is an interactive tree visualization tool designed to help researchers in visualizing
phylogenetic trees and in annotating these with additional information. It offers the user with …

[HTML][HTML] TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses

BC Stöver, KF Müller - BMC bioinformatics, 2010 - Springer
Background Today it is common to apply multiple potentially conflicting data sources to a
given phylogenetic problem. At the same time, several different inference techniques are …