[HTML][HTML] TreeDyn: towards dynamic graphics and annotations for analyses of trees
Background Analyses of biomolecules for biodiversity, phylogeny or structure/function
studies often use graphical tree representations. Many powerful tree editors are now …
studies often use graphical tree representations. Many powerful tree editors are now …
[HTML][HTML] ETE: a python Environment for Tree Exploration
Background Many bioinformatics analyses, ranging from gene clustering to phylogenetics,
produce hierarchical trees as their main result. These are used to represent the relationships …
produce hierarchical trees as their main result. These are used to represent the relationships …
[HTML][HTML] Dendroscope: An interactive viewer for large phylogenetic trees
Background Research in evolution requires software for visualizing and editing phylogenetic
trees, for increasingly very large datasets, such as arise in expression analysis or …
trees, for increasingly very large datasets, such as arise in expression analysis or …
[HTML][HTML] A reference guide for tree analysis and visualization
The quantities of data obtained by the new high-throughput technologies, such as
microarrays or ChIP-Chip arrays, and the large-scale OMICS-approaches, such as …
microarrays or ChIP-Chip arrays, and the large-scale OMICS-approaches, such as …
ggtreeExtra: compact visualization of richly annotated phylogenetic data
S Xu, Z Dai, P Guo, X Fu, S Liu, L Zhou… - Molecular biology …, 2021 - academic.oup.com
We present the ggtreeExtra package for visualizing heterogeneous data with a phylogenetic
tree in a circular or rectangular layout (https://www. bioconductor. org/packages/ggtreeExtra) …
tree in a circular or rectangular layout (https://www. bioconductor. org/packages/ggtreeExtra) …
Phylo.io : Interactive Viewing and Comparison of Large Phylogenetic Trees on the Web
O Robinson, D Dylus, C Dessimoz - Molecular biology and …, 2016 - academic.oup.com
Phylogenetic trees are pervasively used to depict evolutionary relationships. Increasingly,
researchers need to visualize large trees and compare multiple large trees inferred for the …
researchers need to visualize large trees and compare multiple large trees inferred for the …
PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization
Motivation Comparative and evolutionary studies utilize phylogenetic trees to analyze and
visualize biological data. Recently, several web-based tools for the display, manipulation …
visualize biological data. Recently, several web-based tools for the display, manipulation …
Tree Visualization By One Table (tvBOT): a web application for visualizing, modifying and annotating phylogenetic trees
J Xie, Y Chen, G Cai, R Cai, Z Hu… - Nucleic acids …, 2023 - academic.oup.com
Abstract tvBOT is a user-friendly and efficient web application for visualizing, modifying, and
annotating phylogenetic trees. It is highly efficient in data preparation without requiring …
annotating phylogenetic trees. It is highly efficient in data preparation without requiring …
Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees
B Subramanian, S Gao, MJ Lercher, S Hu… - Nucleic acids …, 2019 - academic.oup.com
Evolview is an interactive tree visualization tool designed to help researchers in visualizing
phylogenetic trees and in annotating these with additional information. It offers the user with …
phylogenetic trees and in annotating these with additional information. It offers the user with …
[HTML][HTML] TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses
BC Stöver, KF Müller - BMC bioinformatics, 2010 - Springer
Background Today it is common to apply multiple potentially conflicting data sources to a
given phylogenetic problem. At the same time, several different inference techniques are …
given phylogenetic problem. At the same time, several different inference techniques are …