Clinical analysis of genome next-generation sequencing data using the Omicia platform

EM Coonrod, RL Margraf, A Russell… - Expert review of …, 2013 - Taylor & Francis
Aims: Next-generation sequencing is being implemented in the clinical laboratory
environment for the purposes of candidate causal variant discovery in patients affected with …

Analysis and annotation of whole‐genome or whole‐exome sequencing derived variants for clinical diagnosis

EA Worthey - Current protocols in human genetics, 2017 - Wiley Online Library
Over the last 10 years, next‐generation sequencing (NGS) has transformed genomic
research through substantial advances in technology and reduction in the cost of …

[HTML][HTML] Medical genomics: The intricate path from genetic variant identification to clinical interpretation

B Quintáns, A Ordóñez-Ugalde, P Cacheiro… - Applied & translational …, 2014 - Elsevier
The field of medical genomics involves translating high throughput genetic methods to the
clinic, in order to improve diagnostic efficiency and treatment decision making. Technical …

[HTML][HTML] Variant call format–diagnostic annotation and reporting tool: A customizable analysis pipeline for identification of clinically relevant genetic variants in next …

MC Benton, RA Smith, LM Haupt, HG Sutherland… - The Journal of Molecular …, 2019 - Elsevier
In this article, we introduce the variant call format–diagnostic annotation and reporting tool
(VCF-DART), a customized analysis pipeline tool for the rapid annotation of variants from …

[HTML][HTML] Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease

A Sifrim, JKJ Van Houdt, LC Tranchevent… - Genome medicine, 2012 - Springer
The increasing size and complexity of exome/genome sequencing data requires new tools
for clinical geneticists to discover disease-causing variants. Bottlenecks in identifying the …

Identifying highly penetrant disease causal mutations using next generation sequencing: guide to whole process

AM Erzurumluoglu, S Rodriguez… - BioMed Research …, 2015 - Wiley Online Library
Recent technological advances have created challenges for geneticists and a need to adapt
to a wide range of new bioinformatics tools and an expanding wealth of publicly available …

GeneTalk: an expert exchange platform for assessing rare sequence variants in personal genomes

T Kamphans, PM Krawitz - Bioinformatics, 2012 - academic.oup.com
Next-generation sequencing has become a powerful tool in personalized medicine. Exomes
or even whole genomes of patients suffering from rare diseases are screened for sequence …

Exome and genome analysis as a tool for disease identification and treatment: The 2011 human genome variation society scientific meeting

WS Oetting - 2012 - Wiley Online Library
The 2011 annual scientific meeting of the Human Genome Variation Society (HGVS) was
held on the 11th of October, in Montreal, Canada. The theme of this meeting was “Exome …

[HTML][HTML] Genome alert!: a standardized procedure for genomic variant reinterpretation and automated gene–phenotype reassessment in clinical routine

K Yauy, F Lecoquierre, S Baert-Desurmont, D Trost… - Genetics in …, 2022 - Elsevier
Purpose Retrospective interpretation of sequenced data in light of the current literature is a
major concern of the field. Such reinterpretation is manual and both human resources and …

Genome sequencing data analysis for rare disease gene discovery

UKI Umlai, DK Bangarusamy, X Estivill… - Briefings in …, 2022 - academic.oup.com
Rare diseases occur in a smaller proportion of the general population, which is variedly
defined as less than 200 000 individuals (US) or in less than 1 in 2000 individuals (Europe) …