Transient noise amplification and gene expression synchronization in a bistable mammalian cell-fate switch

S Palani, CA Sarkar - Cell reports, 2012 - cell.com
Progenitor cells within a clonal population show variable proclivity toward lineage
commitment and differentiation. This cell-to-cell variability has been attributed to …

Noise-driven stem cell and progenitor population dynamics

M Hoffmann, HH Chang, S Huang, DE Ingber… - PLoS …, 2008 - journals.plos.org
Background The balance between maintenance of the stem cell state and terminal
differentiation is influenced by the cellular environment. The switching between these states …

Gene expression noise dynamics unveil functional heterogeneity of ageing hematopoietic stem cells

RE Rosales-Alvarez, J Rettkowski, JS Herman… - bioRxiv, 2022 - biorxiv.org
Variability of gene expression due to stochasticity of transcription or variation of extrinsic
signals, termed biological noise, is a potential driving force of cellular differentiation. While …

Oscillatory protein expression dynamics endows stem cells with robust differentiation potential

N Suzuki, C Furusawa, K Kaneko - PloS one, 2011 - journals.plos.org
The lack of understanding of stem cell differentiation and proliferation is a fundamental
problem in developmental biology. Although gene regulatory networks (GRNs) for stem cell …

Integrating extrinsic and intrinsic cues into a minimal model of lineage commitment for hematopoietic progenitors

S Palani, CA Sarkar - PLoS computational biology, 2009 - journals.plos.org
Autoregulation of transcription factors and cross-antagonism between lineage-specific
transcription factors are a recurrent theme in cell differentiation. An equally prevalent event …

Toggle switch: noise determines the winning gene

J Jaruszewicz, T Lipniacki - Physical biology, 2013 - iopscience.iop.org
Bistable regulatory elements enhance heterogeneity in cell populations and, in multicellular
organisms, allow cells to specialize and specify their fate. Our study demonstrates that in a …

Dynamic heterogeneity and DNA methylation in embryonic stem cells

ZS Singer, J Yong, J Tischler, JA Hackett, A Altinok… - Molecular cell, 2014 - cell.com
Cell populations can be strikingly heterogeneous, composed of multiple cellular states, each
exhibiting stochastic noise in its gene expression. A major challenge is to disentangle these …

Order by chance: origins and benefits of stochasticity in immune cell fate control

K Abadie, NA Pease, MJ Wither, HY Kueh - Current opinion in systems …, 2019 - Elsevier
To protect against diverse challenges, the immune system must continuously generate an
arsenal of specialized cell types, each of which can mount a myriad of effector responses …

Single-cell-based analysis highlights a surge in cell-to-cell molecular variability preceding irreversible commitment in a differentiation process

A Richard, L Boullu, U Herbach, A Bonnafoux… - PLoS …, 2016 - journals.plos.org
In some recent studies, a view emerged that stochastic dynamics governing the switching of
cells from one differentiation state to another could be characterized by a peak in gene …

Computational modeling of the hematopoietic erythroid-myeloid switch reveals insights into cooperativity, priming, and irreversibility

V Chickarmane, T Enver… - PLoS computational …, 2009 - journals.plos.org
Hematopoietic stem cell lineage choices are decided by genetic networks that are turned
ON/OFF in a switch-like manner. However, prior to lineage commitment, genes are primed at …