Alternative mRNA transcription, processing, and translation: insights from RNA sequencing

E de Klerk, P AC't Hoen - Trends in Genetics, 2015 - cell.com
The human transcriptome comprises> 80000 protein-coding transcripts and the estimated
number of proteins synthesized from these transcripts is in the range of 250000 to 1 million …

Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments

H Richard, MH Schulz, M Sultan… - Nucleic acids …, 2010 - academic.oup.com
Alternative splicing, polyadenylation of pre-messenger RNA molecules and differential
promoter usage can produce a variety of transcript isoforms whose respective expression …

The ribosome-engaged landscape of alternative splicing

RJ Weatheritt, T Sterne-Weiler… - Nature structural & …, 2016 - nature.com
High-throughput RNA sequencing (RNA-seq) has revealed an enormous complexity of
alternative splicing (AS) across diverse cell and tissue types. However, it is currently …

[PDF][PDF] Universal alternative splicing of noncoding exons

IW Deveson, ME Brunck, J Blackburn, E Tseng, T Hon… - Cell systems, 2018 - cell.com
The human transcriptome is so large, diverse, and dynamic that, even after a decade of
investigation by RNA sequencing (RNA-seq), we have yet to resolve its true dimensions …

The determinants of alternative RNA splicing in human cells

TV Ramanouskaya, VV Grinev - Molecular Genetics and Genomics, 2017 - Springer
Alternative splicing represents an important level of the regulation of gene function in
eukaryotic organisms. It plays a critical role in virtually every biological process within an …

Alternative mRNA polyadenylation in eukaryotes: an effective regulator of gene expression

CS Lutz, A Moreira - Wiley Interdisciplinary Reviews: RNA, 2011 - Wiley Online Library
Alternative RNA processing mechanisms, including alternative splicing and alternative
polyadenylation, are increasingly recognized as important regulators of gene expression …

Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines

JC Castle, C Zhang, JK Shah, AV Kulkarni, A Kalsotra… - Nature …, 2008 - nature.com
Alternative pre–messenger RNA splicing influences development, physiology and disease,
but its regulation in humans is not well understood, partially because of the limited scale at …

[HTML][HTML] Alternative splicing may not be the key to proteome complexity

ML Tress, F Abascal, A Valencia - Trends in biochemical sciences, 2017 - cell.com
Alternative splicing is commonly believed to be a major source of cellular protein diversity.
However, although many thousands of alternatively spliced transcripts are routinely detected …

[HTML][HTML] Genome-wide analysis of alternative pre-mRNA splicing

C Ben-Dov, B Hartmann, J Lundgren… - Journal of Biological …, 2008 - ASBMB
Alternative splicing of mRNA precursors allows the synthesis of multiple mRNAs from a
single primary transcript, significantly expanding the information content and regulatory …

Alternative splicing and RNA selection pressure—evolutionary consequences for eukaryotic genomes

Y Xing, C Lee - Nature Reviews Genetics, 2006 - nature.com
Genome-wide analyses of alternative splicing have established its nearly ubiquitous role in
gene regulation in many organisms. Genome sequencing and comparative genomics have …